Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,740,471 | A→T | 26.5% | intergenic (+36/+35) | hutF → / ← PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,740,471 | 0 | A | T | 26.5% | 63.7 / 23.9 | 45 | intergenic (+36/+35) | hutF/PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
Reads supporting (aligned to +/- strand): ref base A (12/21); new base T (8/4); total (20/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.58e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.33e-01 |
CGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAG > NC_002947/5740328‑5740616 | cgcgATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGGATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGTGCCAGCTTTTGGGCTGAGCGTATCGTGGTTGCGTTGCAGCCCTTCGCGTGCAAGccc < 8:48035/148‑1 (MQ=255) gtgATGGTGAATGGGTAATGGTTGGTGCGCCAGGGGCGGCATGCCCAGGGAGATGAAAGCGTGCGGGCGTTTGCCAAGGTGTTGCGCCATCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGGTCTTGCACGCGAAg < 8:290684/148‑1 (MQ=255) tgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTTCAAGCCCGCGAAgg < 5:138802/148‑1 (MQ=255) aTGTTGAATGGGCAAT‑GGTGGTGCGCCACGGGCGGCATTCCCAGGAAGATGAAAGCGGGCGGGCGTTTCCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑tt < 5:287487/148‑1 (MQ=255) aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGTCCGCGAAGGG‑tt < 4:220601/149‑1 (MQ=255) aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgggc < 5:187689/148‑2 (MQ=38) aTGGTGAATGGGCAATGGGGGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGAGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑tt < 8:133453/149‑1 (MQ=255) aTGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTgcaacgc < 7:225684/149‑1 (MQ=255) gggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTGGCAGCCCTTCGCGTGCAAGCCCGCGCAGGG‑TTgcaacgcaa > 5:225539/1‑149 (MQ=255) gCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAAcc > 7:70331/1‑149 (MQ=255) gtggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCaaaa > 8:225082/1‑148 (MQ=255) cccAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGGAGCCCATAGCGTGGCAGCCCCCGCAGGG‑TTGGCACGCCACCCCCAAAAAC‑TAAGTGGCTTTTTTATAttt > 5:115818/1‑149 (MQ=255) cAGTAAGAGTAACGCGGGCGGGCTTTGCCCAAGGGGTTGCGCCATCTTTTGGGCGGCGGGTACGGGGGTTGCGTTGCAGCCGTTCGCGTGCATGCCGGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGc < 2:264466/149‑1 (MQ=255) cAGGAAGATGAAAGGGGGCGGGCGTTTGCCATGGTGTTGCGCCTGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGc < 7:3398/149‑1 (MQ=255) cAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTTCAGCCCGTCGCGGGGAACGCCGCCCAGGGTTTACAAC‑CCACCCCAAAAAAA‑GAACTGCATTTTTAATAttttg > 6:87131/1‑147 (MQ=255) gAAGATCAACGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGGTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGa < 8:98336/149‑1 (MQ=255) gATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTTCAGCCCGTAGCGTGGGAGGCCGGGAAAGG‑TTGGCAAGCCACCCCCAAAAAA‑GAAGGGGATTTTTACTATTTGGTGAtag > 5:314595/1‑147 (MQ=255) aaGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTg < 8:70331/149‑1 (MQ=255) ggTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt < 7:225082/149‑1 (MQ=255) ggtTGCGCCTGCTTTTGGGCTGAGCGTACCGGGGGTGCGTTGCAGCCCTTCGGGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACGGCAAAAAAC‑TCAGTGCAGTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgtgt < 3:233922/148‑1 (MQ=255) gcCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTTCAGCCCATAGCGGGGAAGCCCGCGCAGGG‑TTTCCACCCCACCCCCAAAAAC‑ACACTGCATTTTTAATATTTTCTGATAGGACCCCCCCCAGATCAAGCGGCTGGTGTAATaac > 2:58243/1‑147 (MQ=255) cAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCTAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATAcccc < 7:34777/149‑1 (MQ=255) tGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTgg < 5:131213/126‑1 (MQ=255) gTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa < 7:205084/149‑1 (MQ=255) gttgcgttgcAACCCTTCGCGGGCTTGCACGCGAAGGG‑CTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGt > 3:112466/1‑149 (MQ=37) tgcgtggcCGCCCGTCGCGGGCCAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAACAC‑TCAGGGCATTTTTCCTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc < 5:82668/149‑1 (MQ=255) gcgttgcAGCCCTTCGCTTGCCAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc < 5:87131/148‑1 (MQ=255) cgttgcAACCCTTCGCGGGCTTGCACGCGAAGGG‑CTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGc < 2:258137/78‑1 (MQ=14) cgttgcAACCCTTCGCGGGCTTGCACGCGAAGGG‑CTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGc > 1:258137/1‑78 (MQ=14) cggtgcAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc < 6:314595/146‑1 (MQ=255) gcAACCCTTCGCGGGCTTGCACGCGAAGGG‑CTGCAACGCAACCCCAAAAAACATCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACg > 1:80638/1‑149 (MQ=38) aGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc > 6:165017/1‑149 (MQ=255) aGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc > 5:180601/1‑149 (MQ=255) gCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc < 6:180601/149‑1 (MQ=255) cccTTCGCGTGCAAGCCCGCGAAGGG‑TTGCCACGGAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGTCGCCCGCCACATCAAGCTGCTGGTTTAATACCCCTGATGACGCGCCATGGACAGCACGTTCTCACGATcc > 5:287331/1‑148 (MQ=255) cccTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgctg < 7:136660/117‑1 (MQ=255) cccTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgctg > 8:136660/1‑117 (MQ=255) cTTCGCGGGCTTGCACGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg > 7:239910/1‑149 (MQ=255) cTTCGCGGGCTTGCACGCGAAGGG‑CTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa > 2:113164/1‑140 (MQ=39) cTTCGCGGGCTTGCACGCGAAGGG‑CTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg > 7:94747/1‑149 (MQ=39) ttCGCGGGCTTGCACGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg > 8:251349/1‑149 (MQ=255) ttCGCGGGCTTGCACGCGAAGGG‑CTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg > 2:79380/1‑149 (MQ=39) gcgTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagc > 5:21580/1‑127 (MQ=255) gcgTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagc < 6:21580/127‑1 (MQ=255) cAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAg < 5:61145/148‑1 (MQ=255) | CGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGG‑TTGCAACGCAACCCCAAAAAAC‑TCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAG > NC_002947/5740328‑5740616 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |