| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 492,308 | T→C | 6.8% | D38G (GAC→GGC) | lptD ← | LPS‑assembly protein LptD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 492,308 | 0 | T | C | 6.8% | 165.3 / 2.3 | 59 | D38G (GAC→GGC) | lptD | LPS‑assembly protein LptD |
| Reads supporting (aligned to +/- strand): ref base T (26/29); new base C (2/2); total (28/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01 | |||||||||||
AGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTCCTGCGTGCCATCTGCCC > NC_002947/492161‑492455 | aGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTc < 7:108353/149‑1 (MQ=255)aGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTc < 6:121448/149‑1 (MQ=255) cACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCg > 1:227770/1‑148 (MQ=255) aCGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGaa < 8:32780/149‑1 (MQ=255) aCGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGaa < 4:10610/149‑1 (MQ=255) gCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGt > 2:221741/1‑149 (MQ=255) gCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGt > 2:217274/1‑149 (MQ=255) gCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGCCGAACAGt > 8:302820/1‑149 (MQ=255) ccGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCt < 1:217274/149‑1 (MQ=255) cGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCt < 1:221741/148‑1 (MQ=255) gCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGc < 5:308140/149‑1 (MQ=255) gTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCAc < 2:63051/149‑1 (MQ=255) gTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGCCGAACAGTTCGACTGCCaa < 7:302820/149‑2 (MQ=255) tCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTa < 4:35442/148‑1 (MQ=255) cGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTAc < 6:234418/148‑1 (MQ=255) cTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTAt > 4:241068/1‑149 (MQ=255) cTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACAACCGGCGGAGGACACTTGGCAGTCGAACTGTTAGGCTGCGACTACGTAt > 5:295760/1‑149 (MQ=255) gcgcccgccGCTTCGGGGCCGCAGCTGACGGCTGCACCTTCCTGCACCGGGCGCGGTGGCACGTTGGCGACTGGGGTTTGGGGCCTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACGGGGCGGCTGCCACTACGTATGa < 6:180774/148‑1 (MQ=255) cgcccgccGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGa < 3:241068/148‑1 (MQ=255) cgcccgccGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAg > 7:244774/1‑149 (MQ=255) gcccgccGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAg < 2:227770/148‑1 (MQ=255) ccgccgCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTg < 1:5727/149‑1 (MQ=255) ccgccgCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTg > 1:42008/1‑149 (MQ=255) ttCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCagag > 3:264114/1‑149 (MQ=255) gCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCagag < 7:159986/130‑1 (MQ=255) gCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCagag > 8:159986/1‑130 (MQ=255) cTTCGTGCACCGGGCGCGGTTGCAAGTTGTTGAATGGTGTTTTGGGGTTGCAGTCCCAACCACCGGCGGCTGATACTTGGCATTGGAACTGTTCGGCTTCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCcagc < 4:110452/137‑1 (MQ=255) cTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCcagc > 3:110452/1‑137 (MQ=255) gTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTAcc < 5:183167/148‑1 (MQ=255) gTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTAc > 3:313500/1‑147 (MQ=255) ccGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAAc < 3:318553/149‑1 (MQ=255) gttgttGACTGGTGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGaa < 5:172598/149‑1 (MQ=255) gACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCgg > 3:292006/1‑149 (MQ=255) aCTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCggg < 3:249079/149‑1 (MQ=255) tGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTa > 1:57038/1‑136 (MQ=255) tGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTa < 2:57038/136‑1 (MQ=255) gttGGGACTGCAAGCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTc > 5:204117/2‑148 (MQ=255) tGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCaa < 4:264114/148‑1 (MQ=255) gggCTTGCAGTCACAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCATCGGAAACTTTCTACGAAACGCGGGGGATTTCAAt < 4:313500/148‑1 (MQ=255) tGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATc > 7:103787/1‑149 (MQ=255) gTCCCAACCACCGGCTGCGGACACTTGGCTGTCGAACTGTTCGGCTGACACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGGCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCttat < 8:244774/149‑1 (MQ=255) tCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCttat > 3:171700/1‑148 (MQ=255) tCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCttat > 2:296824/1‑148 (MQ=255) ccAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAg > 4:160244/1‑149 (MQ=255) aaCCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTc > 5:106310/1‑149 (MQ=255) aaCCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTc > 5:108962/1‑149 (MQ=255) accaccGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTcc > 1:180199/1‑149 (MQ=255) caccGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCgg > 3:313118/1‑149 (MQ=255) cggcggcggACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCt > 2:265386/1‑149 (MQ=255) gcgtctgACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCATAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTc < 6:295760/143‑1 (MQ=255) gcggACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTACAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTCCTg > 1:52226/1‑149 (MQ=255) cggACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGTCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTCCTGc < 8:103787/149‑1 (MQ=255) cggACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTCCTGc < 1:296824/149‑1 (MQ=255) cggACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTCCTGc > 8:123639/1‑149 (MQ=255) ggACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTCCTGCg > 7:76930/1‑149 (MQ=255) gACACTCTGCACTCGCACTGTTCGCCGCCCACTTCGTAGGAGGTGGCCTGCGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTCCTGCGt < 8:302952/149‑1 (MQ=255) tGGCAGCCGAACAGTTCGACTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCggggg < 1:284872/106‑1 (MQ=255) tGGCAGCCGAACAGTTCGACTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCggggg > 2:284872/1‑106 (MQ=255) gTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTCCTGCGTGCCATCTGccc < 7:123639/149‑1 (MQ=255) | AGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAGCAACGGAAACTTTCTACGAAACGCGGGGGATTTCAATGCCATCTTATTAGTCCGGGCTTCCTGCGTGCCATCTGCCC > NC_002947/492161‑492455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |