Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,087,682 | C→T | 8.7% | intergenic (+133/‑97) | oruR → / → aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,087,682 | 0 | C | T | 8.7% | 161.9 / 4.3 | 58 | intergenic (+133/‑97) | oruR/aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase |
Reads supporting (aligned to +/- strand): ref base C (23/29); new base T (2/3); total (26/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.96e-01 |
CCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGCCTGCACCACGGCCGCTGC > NC_002947/6087534‑6087826 | ccATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGAcc > 6:322742/1‑149 (MQ=255) gTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAGGTCTTTGGccgg < 2:201957/149‑3 (MQ=255) tGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCata < 4:177457/149‑1 (MQ=255) ggTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCatat > 8:242256/1‑149 (MQ=255) gTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAGGTCTTTGGccggat < 3:294709/148‑5 (MQ=255) gACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAGGTCTTTGGccggatggg < 5:314861/148‑8 (MQ=38) ccTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATc < 8:284148/148‑1 (MQ=255) cTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTGACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATAAATgcc > 6:252712/1‑149 (MQ=255) cTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCttt < 2:56481/148‑1 (MQ=255) gCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCtttt < 7:38688/146‑1 (MQ=255) ggTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCCTCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGcgtcg > 7:14113/1‑149 (MQ=255) cAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGAt < 3:234726/148‑1 (MQ=255) aGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑a < 8:194715/149‑1 (MQ=255) gggCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGc > 5:128303/1‑149 (MQ=255) ggCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGc < 7:107714/148‑1 (MQ=255) acaACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCa < 2:285325/145‑1 (MQ=255) acaACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCAACCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCa > 1:285325/1‑145 (MQ=255) aaCCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACaa < 7:71854/149‑1 (MQ=255) aaCCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACaa > 3:98252/1‑149 (MQ=255) aCCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAAt < 6:128303/149‑1 (MQ=255) cccTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCttt > 6:14566/1‑103 (MQ=255) cccTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCttt < 5:14566/103‑1 (MQ=255) ccTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGa < 8:155202/149‑1 (MQ=255) tGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTgg > 8:94495/1‑103 (MQ=255) gACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGAcc > 1:176187/1‑148 (MQ=255) aCGCCCTTGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCTGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGAcc < 5:252712/147‑1 (MQ=255) cccTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGc < 7:242256/149‑1 (MQ=255) ccTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGc > 7:213690/1‑148 (MQ=255) gtggCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTc < 2:67771/149‑1 (MQ=255) gTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGga < 8:137795/148‑1 (MQ=255) aGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGaacaa < 8:213690/149‑1 (MQ=255) ggTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAAt > 2:4088/1‑149 (MQ=255) ggTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAAt < 5:322742/149‑1 (MQ=255) ggTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGACATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAAt < 8:149734/149‑1 (MQ=255) gTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAAt > 2:284490/1‑148 (MQ=255) accGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCTTGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGa < 1:80292/148‑1 (MQ=255) cgcgAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGa > 4:307359/1‑149 (MQ=255) gcgAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGa > 6:230992/1‑148 (MQ=255) gcgAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGAt < 2:276870/149‑1 (MQ=255) gAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATTACAATGGACCCAAGCCAGTCCAACCGGATAACAACAAAGCTGAcagaac > 6:149328/1‑144 (MQ=255) gAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGa < 5:149328/143‑1 (MQ=255) ggCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTcc > 4:49622/1‑149 (MQ=255) ccGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATGTATTCCGa > 2:26061/1‑149 (MQ=255) ccGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGa > 5:116414/1‑149 (MQ=255) cGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGAt < 8:14113/149‑1 (MQ=255) cGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGAt < 5:16225/149‑1 (MQ=255) ggATAGGTCACCACCCATCCGGCCAAAGACATTGGCCAAATAAATCCCCATTTTCCAGTTTGCGTCGTTCTCCCATGCTGATC‑AGCCCATGACAATGGACCCACTCCAGTCCCACCGAAGAACAACAATGATCACGATCTATTACGAt > 8:171991/1‑148 (MQ=255) aTAGGTCACCACCCATCCGGCCAAAGACCTTGGCTATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGac > 2:34026/1‑149 (MQ=255) aTAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGac < 2:176187/149‑1 (MQ=255) accaccCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGc < 6:116414/148‑1 (MQ=255) cATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTc < 7:188502/96‑1 (MQ=255) cATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTc > 8:188502/1‑96 (MQ=255) tatggCCAAGGTCTTTGGACATATCAATCACCTTTTGGCCGTTTGCGTCGTTGTCCCATGCTGATC‑AGCCCATGACAATGGACACACGACAGTCCCACCGGAGAACAAAAATGATGACGATCTATTCCGATGACAACCGCCTGcaccac > 8:20694/4‑149 (MQ=255) tCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGCCTGcaccac > 1:224207/1‑149 (MQ=255) atggCCAAGGTCTTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGCCTGCACCACg > 1:294861/3‑149 (MQ=255) ccAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGCCTGCACCACGGCCg < 2:224207/149‑1 (MQ=255) cAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGCCTGCACCACGGCCGc < 1:284490/149‑1 (MQ=255) aaGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGCCTGCACCACGGCCGCTg > 3:38929/1‑149 (MQ=255) gACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGCCTGCACCACGGCCGCTGc > 2:306711/1‑148 (MQ=255) | CCATTTTCGTGGTTGACCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCGTCACAACCCCTGACGCCCTGGTGGCCATTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATC‑AGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGCCTGCACCACGGCCGCTGC > NC_002947/6087534‑6087826 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |