| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,129,173 | A→T | 6.5% | intergenic (+35/+32) | PP_5376 → / ← PP_5377 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,129,173 | 0 | A | T | 6.5% | 235.8 / 5.1 | 77 | intergenic (+35/+32) | PP_5376/PP_5377 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (36/36); new base T (3/2); total (39/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.71e-01 | |||||||||||
CCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGCCTGCCGGCATA > NC_002947/6129026‑6129319 | cccGGGGAAGCTGTGACGTGATGCCTGAGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTaa < 2:91306/149‑1 (MQ=255) tgACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGttt < 6:293772/147‑1 (MQ=255) tgACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGc < 7:99803/149‑1 (MQ=255) tgACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGc > 5:201590/1‑149 (MQ=255) aCGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCCAACGCAAACGGCGCTTTTAAGGCGCCGTTTTCg < 7:265452/148‑1 (MQ=39) aCGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCg < 5:70548/148‑1 (MQ=255) gggATGCAGGCGCATATGACCTATGAAGACTCGCCAGGCTAGCTCAACATTCTCGATTACCGCGGATCTGGCATCAATTGGCGCAGCCAAAATTGAGCTCTGATTGCTGTCCAAACGAAACCGGCGCCTTAAAAGCGCCGTTTGCGTT‑g < 4:209243/147‑1 (MQ=255) gATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCTACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGAGCCGTAAAAGCGCCGTTTGCGAT‑gg > 7:292977/1‑148 (MQ=255) gATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑gg > 6:125598/1‑148 (MQ=255) cTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑g > 3:288557/1‑142 (MQ=255) cTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑g < 4:288557/142‑1 (MQ=255) gcgcAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACgg > 1:201257/1‑149 (MQ=255) cgcAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGt < 5:4039/149‑1 (MQ=255) gcAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTg < 8:174003/149‑1 (MQ=255) cAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTgg < 5:242514/149‑1 (MQ=255) aaaTGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTggg > 5:296191/1‑149 (MQ=255) aaTGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGt < 2:8239/149‑1 (MQ=255) ccTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑gg < 3:172569/131‑1 (MQ=255) ccTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑gg > 4:172569/1‑131 (MQ=255) aTGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGcc > 6:162222/1‑149 (MQ=255) aCTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATa > 6:284116/1‑149 (MQ=255) gACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATAct < 5:125598/147‑1 (MQ=255) gCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAGCGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAAc > 5:14105/1‑149 (MQ=255) gCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAAc > 6:144428/1‑149 (MQ=255) aGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCAc < 5:162222/149‑1 (MQ=255) cTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACtt < 5:284116/149‑1 (MQ=255) tCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACtt > 5:135694/1‑148 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTc < 6:296191/147‑1 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTc < 5:153249/147‑1 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCAt > 4:161377/1‑149 (MQ=255) aCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGTCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATc > 5:293148/1‑149 (MQ=255) aCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACttcttc < 6:293148/149‑1 (MQ=255) aCATTCTCGAATACCGAGCAGCTGTCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATc < 7:236280/149‑1 (MQ=255) cATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATcc < 1:56722/149‑1 (MQ=255) cATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATcc > 8:51910/1‑149 (MQ=255) ttCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCg > 1:108316/1‑149 (MQ=255) cGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCg > 2:152987/1‑149 (MQ=255) aTACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGctc < 2:66180/149‑1 (MQ=255) ccGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCACTCttg < 6:201590/149‑1 (MQ=255) gcgcAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt < 6:135694/149‑1 (MQ=255) gcgcAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt > 6:114797/1‑149 (MQ=255) ccgcAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt < 1:137428/148‑1 (MQ=255) cgcAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt > 4:100650/1‑148 (MQ=255) tGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt > 8:51237/1‑142 (MQ=255) tGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt < 7:51237/142‑1 (MQ=255) gCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt > 4:88272/1‑140 (MQ=255) gCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt < 3:88272/140‑1 (MQ=255) aTCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGa > 7:164056/1‑149 (MQ=255) aTCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGa > 3:264329/1‑149 (MQ=255) aaTTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCt > 1:145930/1‑149 (MQ=255) ttGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTgg < 2:201257/149‑1 (MQ=255) cgGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCa < 5:324576/149‑1 (MQ=255) gCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCAt > 7:52266/1‑148 (MQ=255) ccAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATga < 3:161377/149‑1 (MQ=255) cAAAATTGAGCTCTGAATGCTGTCCAAACGAAAGCGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATgag < 6:14105/149‑1 (MQ=255) cAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCAt > 7:77267/1‑146 (MQ=255) cAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCAt > 6:1009/1‑146 (MQ=255) cAAAATTGAGCTCTGAAGGCTGTCCAAACGAAAACGGCTCCTTAAAAGCGCCGTTTGCGTT‑GTGAAAACGGTGGTTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATTCATga < 8:259324/148‑1 (MQ=255) aTTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGac < 1:152987/149‑1 (MQ=255) tGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGacac > 5:255492/1‑149 (MQ=255) tGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATActct > 1:212827/1‑81 (MQ=255) tGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATActct < 2:212827/81‑1 (MQ=255) aaTGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACt > 1:76124/1‑149 (MQ=255) ccgttttCCCAACGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTT‑TGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATgag < 4:40452/127‑1 (MQ=25) ccgttttCCCAACGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTT‑TGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATgag > 3:40452/7‑133 (MQ=25) acTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTg < 3:15920/119‑1 (MQ=255) acTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTg > 4:15920/2‑120 (MQ=255) caaCGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTgg > 6:312082/2‑149 (MQ=39) cGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGgaga < 7:51910/149‑1 (MQ=255) cGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGga > 5:246213/1‑147 (MQ=255) gAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt > 7:200920/1‑94 (MQ=255) gAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt < 8:200920/94‑1 (MQ=255) taaaCGGCGGCTTAAACGCGCCTTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCTACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGc < 8:292977/148‑1 (MQ=255) caaaCGGCGCTTTTAAGGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGc > 6:201049/2‑149 (MQ=255) aaaaCGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGc > 6:284024/1‑149 (MQ=255) aaaaCGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGc < 5:1009/149‑1 (MQ=255) gcCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGCCTGCCgg > 5:261190/1‑148 (MQ=255) cTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTACGCTCTTGTTGAGACCGATTACCTGGTATGCATGAGAGACACAATCCACTTCAATACCTGGATAGCCTGCCggaa > 5:241024/1‑146 (MQ=255) aaaaGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGc > 1:267929/1‑136 (MQ=255) aaaaGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGc < 2:267929/136‑1 (MQ=255) aaaaGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGCCTGCCGGCATa < 6:255492/147‑1 (MQ=255) | CCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTT‑GGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGCCTGCCGGCATA > NC_002947/6129026‑6129319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |