Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 635,840 | G→T | 11.6% | E22* (GAA→TAA) ‡ | mpl → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 635,840 | 0 | G | T | 11.6% | 143.8 / 6.3 | 51 | E22* (GAA→TAA) ‡ | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
Reads supporting (aligned to +/- strand): ref base G (22/23); new base T (3/3); total (25/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATTACCAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGCAACGCCAT > NC_002947/635693‑635988 | aTTACCAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAgg > 5:159197/1‑148 (MQ=255) ttACCAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGaa < 6:314499/149‑1 (MQ=255) tACCAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTCCCCTGCCTCGAGGT‑TTGGCGAGGTCGACGCTGCATATTCACGTTGGGGGTATTTGCGGGAGTTTGATGGGTTCGCTGGCGGTGCTGGCCAAGGacc > 4:183476/1‑147 (MQ=255) cAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTg < 3:32418/149‑1 (MQ=255) ggggCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGc > 5:271242/1‑149 (MQ=255) ggCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGTTCC‑TTGGCCa < 5:168568/149‑1 (MQ=255) gACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGTATTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCAAAGGAAC‑TTGGCCAcc > 1:88689/1‑149 (MQ=255) aGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGTTCC‑TTGGCCag < 5:62615/142‑2 (MQ=255) aGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACcgcg < 6:112858/146‑1 (MQ=255) aGCGAAACAGCGGGTGCGATTTGTCGCGACCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTATCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGTTCC‑TTGGCCag > 6:62615/1‑141 (MQ=255) gCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCAc > 6:310909/1‑149 (MQ=255) gAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCg > 6:283425/1‑149 (MQ=255) cAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGctc < 6:163266/149‑1 (MQ=255) aGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGctct > 1:69895/1‑149 (MQ=255) cGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGa < 6:76040/149‑1 (MQ=255) gggTGCGATTTGTCGCGCCCTGGGCTACCCTGTCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGAc > 1:263302/1‑149 (MQ=255) gggTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGAc < 6:159197/149‑1 (MQ=255) gggTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGAc < 5:191829/149‑1 (MQ=255) tGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGcg < 4:108704/149‑2 (MQ=255) tCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTAt > 5:109718/1‑149 (MQ=255) cTGGGCTACCCTGTCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGa < 2:263302/149‑1 (MQ=255) cTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGa < 3:5404/149‑1 (MQ=255) ggCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGa < 6:109718/149‑1 (MQ=255) ggCTACCCTGCCTCGATGT‑TTTGCGAGGTCGAACATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGa < 5:177716/149‑1 (MQ=255) aCCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCTGTATTTGCTGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGTCTCTGACGCCAACGTCTATCCCCCGATGAGCa < 5:310909/148‑1 (MQ=255) tGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAg > 2:308302/1‑149 (MQ=255) ccTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGc < 2:69895/148‑1 (MQ=255) gATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCg > 5:78403/1‑147 (MQ=255) cGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAggg < 8:141063/148‑1 (MQ=255) gAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCa > 1:276896/1‑144 (MQ=255) gAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCa < 2:276896/144‑1 (MQ=255) ggTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATc < 6:271242/149‑1 (MQ=255) tCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGaa > 4:261159/1‑121 (MQ=255) tCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGaa < 3:261159/121‑1 (MQ=255) caTTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTAt > 7:84967/1‑148 (MQ=255) tctcGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATACCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGAcc > 7:124818/1‑149 (MQ=255) tcGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAACGTTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGAccc > 1:244205/1‑149 (MQ=255) tcGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCg > 5:144440/1‑149 (MQ=255) ggTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGc < 6:144440/149‑1 (MQ=255) tATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGcc > 4:41741/1‑148 (MQ=255) cTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCg < 8:284038/149‑1 (MQ=255) aTGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGGACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGgcgc < 6:78403/148‑1 (MQ=255) cGCTGGCGGTGCCGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCtg > 5:285066/1‑149 (MQ=255) gCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGGCGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTggtggt > 5:291189/1‑149 (MQ=255) gCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCtggtg < 2:88689/147‑1 (MQ=255) gcggtGGCCAAGTTCC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATc < 2:57015/123‑1 (MQ=255) gcggtGGCCAAGTTCC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATc > 1:57015/5‑127 (MQ=255) tGGCCAAGTTCC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCgg > 4:297791/1‑148 (MQ=255) ggCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGc > 7:43030/1‑148 (MQ=255) gCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGc < 1:308302/147‑1 (MQ=255) cAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACACAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGCAACg > 2:260433/1‑149 (MQ=255) aGGAAC‑TTGGCCCCCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGCACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGCAACGc > 6:280691/1‑148 (MQ=255) ggAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGCAACGCCa > 5:121348/1‑149 (MQ=255) gAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCt < 6:251637/128‑1 (MQ=255) gAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCt > 5:251637/1‑128 (MQ=255) gAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGCAACGCCAt < 3:183476/149‑1 (MQ=255) | ATTACCAGGGGCGACTGAGCGAAACAGCGGGTGCGATTTGTCGCGCCCTGGGCTACCCTGCCTCGATGT‑TTTGCGAGGTCGACCATGCATATTCACATTCTCGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAGGAAC‑TTGGCCACCGCGTCACCGGCTCTGACGCCAACGTCTATCCCCCGATGAGCACCCAGCTCGAAGCCCAGGGTATCGAACTGACCCAAGGCTATGACCCGGCCCAGCTGGATCCGGCGCCAGACCTGGTGGTCATCGGCAACGCCAT > NC_002947/635693‑635988 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |