| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 702,764 | T→G | 8.9% | intergenic (+12/‑120) | PP_23SD → / → PP_5SD | 23S ribosomal RNA/5S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 702,764 | 0 | T | G | 8.9% | 212.4 / 12.6 | 79 | intergenic (+12/‑120) | PP_23SD/PP_5SD | 23S ribosomal RNA/5S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (36/36); new base G (2/5); total (38/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 | |||||||||||
CTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAAC > NC_002947/702628‑702910 | cTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCg > 1:147258/1‑149 (MQ=31)cTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCg < 2:243900/149‑1 (MQ=31) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTTTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCAGCGCAA‑TCTGCGTAGCAGATTGcttgg < 3:105653/149‑5 (MQ=11) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCGTAGCAGATTGctt < 4:285915/147‑3 (MQ=2) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCGTAGCAGATTGctt < 6:59886/147‑3 (MQ=2) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAACAA‑TCTGCGTAGCAGATTGctt < 4:15636/147‑3 (MQ=255) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTCTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCGTAGCAGATTGctt < 7:156116/147‑3 (MQ=255) tCTTGAATCCCCTCAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGTGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCggtgg < 1:244315/148‑1 (MQ=255) gAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCggtggt < 7:125801/144‑1 (MQ=32) gAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGgtggtg < 2:294699/145‑1 (MQ=32) gAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGgtggtg < 5:213830/145‑1 (MQ=32) aTCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACg < 3:106286/149‑1 (MQ=32) cccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGaaa < 6:232949/149‑1 (MQ=32) cccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGaaa < 7:120014/149‑1 (MQ=32) ccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGa > 8:31212/1‑146 (MQ=32) ccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGa > 4:176094/1‑146 (MQ=32) ccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGa > 7:1266/1‑146 (MQ=32) ggCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGa > 5:147134/1‑148 (MQ=32) gacGTCTAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTTAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGaaa < 5:313882/147‑1 (MQ=12) cGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAAt < 1:4477/149‑1 (MQ=32) aGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGAACCGAAAATTCGTGc > 3:204123/1‑149 (MQ=17) aCTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCtt > 3:154106/1‑149 (MQ=32) tACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGgtggtg < 2:173106/119‑1 (MQ=32) aagTTGATAGGTTGGGTGTGTAATCGCTGTGATGCGTTTATCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAATTCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTacac < 1:89422/147‑1 (MQ=11) aTAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACAAATACTAATTG‑CCCTTGAGGCTTGAAAATATAACACAAAAGAAA‑TCTGCTACGAAGATTTCGTTGGTGAAGACGAAAGACCCGAAATTTCGTGCTTTACACAagatat > 8:121615/1‑146 (MQ=11) ggTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGCCCCGAAAATTCGTGCTTTACACAAGAGCTTCg > 4:248483/1‑149 (MQ=17) gTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCg > 3:203052/1‑148 (MQ=32) gtgtctAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAGGCAA‑TCTGCTACGCAGATTTCGGTGGTGAAGACGAAAGACACGAAAATTCGTGCTTTACACAAGAGCTTCGCAAat > 8:178591/1‑148 (MQ=255) tgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCg < 7:31212/149‑1 (MQ=32) tgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCg < 2:147258/149‑1 (MQ=32) tAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGATACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGc < 5:248872/148‑1 (MQ=17) aaGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGCGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCa > 3:1451/1‑148 (MQ=17) gcgcTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCatat > 8:71343/1‑149 (MQ=32) tgtgAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCGTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGCTGGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCg > 4:274374/1‑148 (MQ=12) aGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCg > 5:177692/1‑127 (MQ=32) aGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCg < 6:177692/127‑1 (MQ=32) gCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCg > 2:87576/1‑125 (MQ=32) gCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCg < 1:87576/125‑1 (MQ=32) gCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTg < 2:212469/149‑1 (MQ=32) cTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGt < 6:169360/149‑1 (MQ=32) cTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGt < 6:198395/149‑1 (MQ=32) tAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTc < 4:204313/149‑1 (MQ=32) aCCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCa > 3:154627/1‑149 (MQ=32) ccAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCa > 8:128608/1‑148 (MQ=32) aaTACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCt < 4:234151/149‑1 (MQ=32) aTACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTa > 6:5560/1‑97 (MQ=33) aTACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTa < 5:5560/97‑1 (MQ=33) aTACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTg < 6:147134/149‑1 (MQ=32) tACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTgg < 5:283618/149‑1 (MQ=32) tAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACa > 7:274121/1‑149 (MQ=32) aTTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACAtt > 5:284632/1‑149 (MQ=32) aTTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACAt > 5:228155/1‑148 (MQ=32) tG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCt < 7:218165/149‑1 (MQ=32) cccGTGAGGCTTGAGCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTgg > 4:5268/1‑149 (MQ=17) cccGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGt > 3:58618/1‑132 (MQ=32) cccGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGt < 4:58618/132‑1 (MQ=32) cccGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCt > 8:218165/1‑147 (MQ=32) cGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCa > 6:290540/1‑109 (MQ=32) gCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGaa > 8:119484/1‑149 (MQ=32) ccATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCtt < 3:176094/149‑1 (MQ=32) atatAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTga < 8:1266/149‑1 (MQ=32) atatAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTga > 2:89499/1‑149 (MQ=32) atatAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTga > 6:312115/1‑149 (MQ=32) taACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTgacga > 7:211518/1‑149 (MQ=32) cccAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATa < 4:154627/149‑1 (MQ=32) ccAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCa > 5:175407/1‑146 (MQ=32) ccAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCa > 1:314123/1‑146 (MQ=32) cAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATa > 5:125060/1‑147 (MQ=32) cgCAA‑TCTGCGTAGCAGATTGCGGTGGTGATGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATagag > 1:28762/2‑148 (MQ=255) cgCAA‑TCTGCGTAGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATagag > 7:269952/2‑148 (MQ=12) aa‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACTAGAGCTTCTCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCAtt < 4:289075/149‑1 (MQ=17) aa‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCAtt < 7:128608/149‑1 (MQ=32) aa‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCAtt < 4:1451/149‑1 (MQ=32) aa‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCAtt < 4:154106/149‑1 (MQ=32) aa‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCAtt < 4:284327/149‑1 (MQ=32) aatcatcTAAGCAGATTTCGTTTGTGAAGAAGAAAGACACCTAATTTCTTTCTTTACACAAGAGATTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGTCAACATAATTTCTTGACGACCATAGAGCAt < 7:121615/142‑1 (MQ=11) gCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAac > 7:157030/1‑149 (MQ=32) cTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAac > 5:269896/1‑148 (MQ=31) cTAAGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACAAAAGAGATTCGCAAATATCGCATATCCGAATTCGCta > 8:21329/1‑88 (MQ=11) | CTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTG‑CCCGTGAGGCTTGACCATATAACACCCAAGCAA‑TCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAAC > NC_002947/702628‑702910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |