Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 956,583 | G→T | 9.6% | intergenic (+16/‑98) | alaC → / → PP_0818 | aminotransferase/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 956,583 | 0 | G | T | 9.6% | 136.0 / 4.4 | 49 | intergenic (+16/‑98) | alaC/PP_0818 | aminotransferase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (21/23); new base T (2/3); total (23/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 |
TGACTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACTGGCTCGCACCGTTTCGAC > NC_002947/956453‑956731 | tGACTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCct > 1:19195/1‑149 (MQ=255) aCTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCTTCGCAGCCCCattg < 7:232964/143‑4 (MQ=255) aCTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCTTCGCAGCCCCattg > 8:232964/1‑140 (MQ=255) tGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTggg < 3:130290/149‑1 (MQ=255) tGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTgg < 1:69342/148‑1 (MQ=255) tGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTgg < 4:78936/148‑1 (MQ=255) ggggACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGt > 6:268471/1‑149 (MQ=255) ggACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGa < 3:226770/149‑1 (MQ=255) ggACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCAATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGa < 3:222554/149‑1 (MQ=255) acgacCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGc > 6:330029/1‑149 (MQ=255) gacCATGTGCGCTTTGCGTTGCTCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTgg > 1:82628/1‑141 (MQ=255) gacCATGGGCGCTTTGCGTTGTTCGATAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTgg < 2:82628/141‑1 (MQ=255) ccATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTc > 7:223491/1‑149 (MQ=255) tgCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCgcat > 1:289543/1‑147 (MQ=255) gTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGt > 3:160301/1‑149 (MQ=255) aTCGAGATCCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTAc < 5:330029/148‑1 (MQ=255) aTCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGCAAAATGTTCCGGGCTGATGGTTTGGATCGCAATTACGCCCAATGGGGCTGCGAAGCAGCCCCAACTCCATCTTGGTTGCGATTTCCGCATGCGTACTGGTTAc > 1:75753/1‑149 (MQ=255) aTCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTAc < 8:61703/148‑1 (MQ=255) gaACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTAc < 5:268471/149‑1 (MQ=255) cAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCt < 6:288308/133‑1 (MQ=255) cAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCt > 5:288308/1‑133 (MQ=255) ggACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTAc < 5:295877/149‑1 (MQ=255) gACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTAcc < 7:189529/149‑1 (MQ=255) cGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTc < 3:129878/149‑1 (MQ=255) gTATTCGCCAGGCCATCGGCGGGATACGGC‑AAATGTTCCGGGCTGTTGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCa < 8:167641/149‑1 (MQ=255) tttCGCCTGGCCTGCGGGGGGATCCGGA‑AAATGTTCGGGGCTGTGGGTTGGGTGCGCAAGTAAGCCCATTGGGGGTGCTAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAg < 4:160301/147‑1 (MQ=255) gCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACt > 7:8352/1‑148 (MQ=255) cAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCAt < 2:19195/149‑1 (MQ=255) aTCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCa > 7:50670/1‑149 (MQ=255) cgcgGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCAcc > 5:288515/1‑148 (MQ=255) cgGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTg > 5:261971/1‑84 (MQ=255) cgGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTg < 6:261971/84‑1 (MQ=255) cgGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCaaa < 8:50670/149‑1 (MQ=255) aTCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCaaa > 7:78570/1‑145 (MQ=255) ggC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAGGAGATccc < 6:288515/149‑1 (MQ=255) gC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCTTCGCAGCCCCatt < 4:21857/66‑3 (MQ=37) gC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCTTCGCAGCCCCatt > 3:21857/1‑64 (MQ=37) ttCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAgt < 8:78570/149‑1 (MQ=255) ttCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTATCACCAAAGAGATCACCCATGact > 8:264806/1‑147 (MQ=255) cTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTAc > 6:174005/1‑96 (MQ=255) cTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTAc < 5:174005/96‑1 (MQ=255) tGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCAc > 8:74106/1‑149 (MQ=255) tGATGGTTTGCCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACCCCAACCGTCAg > 7:54264/1‑107 (MQ=255) tAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACt > 3:228260/1‑149 (MQ=255) tGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACTGGCTCGCAc < 2:75753/149‑1 (MQ=255) gCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCCCCGCCTACTTCTGCGGCGCTGGCTCGCCCCGtt > 4:56474/1‑149 (MQ=255) gCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCt < 2:221532/122‑1 (MQ=255) gCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCt > 1:221532/1‑122 (MQ=255) cGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACTGGCTCGCACCGTTTc < 7:74106/147‑1 (MQ=255) gAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCCCTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACTGGCTCGCACCGTTTcgac > 5:239941/1‑149 (MQ=255) | TGACTATGGGGACGACCATGTGCGCTTTGCGTTGATCGAGAACCAGGACCGTATTCGCCAGGCCATCCGCGGGATCCGGC‑AAATGTTCCGGGCTGATGGTTTGGCTCGCAAGTAAGCCCAATGGGGCTGCGAAGCAGCCCCAACTGCCTCTTGGGTGAGCTTTCCGCCTGCCTTCTGGTTACCCGTACGCCTACCGTCAGCACTCATTTCTCACCAAAGAGATCCCCCATGAGTGTCTTCACCGCCTACTTCTGCGGCACTGGCTCGCACCGTTTCGAC > NC_002947/956453‑956731 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |