Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,104,167 | T→A | 6.6% | M309K (ATG→AAG) | murA → | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,104,167 | 0 | T | A | 6.6% | 183.5 / 2.9 | 61 | M309K (ATG→AAG) | murA | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
Reads supporting (aligned to +/- strand): ref base T (31/26); new base A (2/2); total (33/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.55e-01 |
CATCCTTGAAGCCGTGCTTGAAAAGCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAGGCAACACCGCCATCG > NC_002947/1104021‑1104310 | cATCCTTGAAGCCGTGCTTGAAAAGCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGc > 8:205905/1‑149 (MQ=255) cATCCTTGAAGCCGTGCTTGAAAAGCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGACGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGc > 8:205903/1‑149 (MQ=255) tCCTTGAAGCCGTGCTTGAAAAGCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAg < 1:187618/149‑1 (MQ=255) gAAGCCGTGCTTGAAAAGCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGgcg > 2:153194/1‑147 (MQ=255) gTGCTTGAAAAGCTCAAGGAAGCGGGTGCCGACATCAACACCTGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCAGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCAt < 5:238454/149‑1 (MQ=255) gTGCTTGAAAAGCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCa > 7:236255/1‑148 (MQ=255) tGCTTGAAAAGCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCAtc > 8:15339/1‑149 (MQ=255) aGCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAAt < 8:167018/149‑1 (MQ=255) gCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATg > 5:272678/1‑149 (MQ=255) aaGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCag > 4:51648/1‑148 (MQ=255) aaGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCa < 6:128844/148‑1 (MQ=255) ggAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTg > 2:152040/1‑149 (MQ=255) ggAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTg < 8:236255/149‑1 (MQ=255) aaGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGcc > 4:98001/1‑149 (MQ=255) aaGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGcc > 4:93485/1‑149 (MQ=255) ggTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGaa < 2:17899/147‑1 (MQ=255) ggTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGaa > 1:17899/1‑147 (MQ=255) ggTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAgg > 6:57388/1‑149 (MQ=255) gTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATTCCATTGCCGAAgg > 2:5346/1‑148 (MQ=255) cGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTg < 5:57388/149‑1 (MQ=255) gACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTgg > 8:5739/1‑149 (MQ=255) aCATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGATGAATGACATTGCCGAAGGCACTg > 3:224304/1‑147 (MQ=255) tCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACAGGcgcg > 7:128329/1‑149 (MQ=255) aaCACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGt > 8:299610/1‑149 (MQ=255) acCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGAt < 7:5739/149‑1 (MQ=255) ccGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACAAGCAGGCGCAGTTc < 8:42923/107‑1 (MQ=255) ccGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACAAGCAGGCGCAGTTc > 7:42923/1‑107 (MQ=255) gCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATc > 4:149095/1‑146 (MQ=255) aaGTCTGGATGGAACTGGACATGCTTGGCAAGCGGCCGTAAGCCGTCATGCTGCGTACTGCCCCGTATCCGGCGTTGCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGGCTTTGCCGAAGGCACTGGCGCGGTGATCGAGAcc < 4:214910/149‑1 (MQ=255) gATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTc > 4:241355/1‑148 (MQ=255) aTCGAACTGGACATGCATGGCAAGCGGCCGAAAGTCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACAAGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCg > 6:229887/1‑148 (MQ=255) aaCTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAAc > 4:316420/1‑149 (MQ=255) aCTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAAcc > 6:51981/1‑149 (MQ=255) catgcatgGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTca < 7:15339/149‑1 (MQ=255) gcatgGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTcatg > 3:307404/1‑148 (MQ=255) atgGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTcatgcat < 1:152040/149‑1 (MQ=255) atgGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTcatgcat < 3:241355/149‑1 (MQ=255) cAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGtt > 8:134146/1‑148 (MQ=255) aaGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTa > 2:63839/1‑149 (MQ=255) cGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGaa > 7:1876/1‑126 (MQ=255) cGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGaa < 8:1876/126‑1 (MQ=255) gCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGaaa < 1:5346/149‑1 (MQ=255) cGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATg < 7:134146/149‑1 (MQ=255) gAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCACGCATGTTTACGAAATGc < 7:299610/149‑1 (MQ=255) aGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCTGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCAcc < 7:205905/149‑1 (MQ=255) aGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCTGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCACGCATGTTTACGAAATGCAcc < 7:205903/149‑1 (MQ=255) cGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCa > 8:223183/1‑149 (MQ=255) cTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTAc > 5:279925/1‑129 (MQ=255) cTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTAc < 6:279925/129‑1 (MQ=255) cTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGAt < 3:98001/148‑1 (MQ=255) cTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGAt < 3:93485/148‑1 (MQ=255) cccGTATCCGGCGTTCCCGACCGACAAGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAgg < 5:229887/149‑1 (MQ=255) tCCGGCGTTCCCGACCTACATGCAGGCGCAGTTCATCTCGCTGAATGACATTGCCGAAGGCACTGGCGCGGTTATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAg < 4:224304/149‑1 (MQ=255) tCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAg < 1:63839/149‑1 (MQ=255) tCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAg < 8:105933/149‑1 (MQ=255) cGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGTACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAgg > 7:260166/1‑148 (MQ=255) cGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAgg > 1:324902/1‑148 (MQ=255) gCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAGGCaa < 3:149095/149‑1 (MQ=255) cGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAGGCAac < 7:223183/149‑1 (MQ=255) cgaccgacATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAGGCAACACCGc > 3:277390/1‑148 (MQ=255) cgacATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAGGCAACACCGCCATCg > 8:141591/1‑149 (MQ=255) | CATCCTTGAAGCCGTGCTTGAAAAGCTCAAGGAAGCGGGTGCCGACATCAACACCGGCGAAGACTGGATCGAACTGGACATGCATGGCAAGCGGCCGAAAGCCGTCAACCTGCGTACTGCCCCGTATCCGGCGTTCCCGACCGACATGCAGGCGCAGTTCATCTCGCTGAATGCCATTGCCGAAGGCACTGGCGCGGTGATCGAGACCATCTTCGAAAACCGCTTCATGCATGTTTACGAAATGCACCGCATGGGCGCGCAGATCCAGGTTGAAGGCAACACCGCCATCG > NC_002947/1104021‑1104310 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |