Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,366,654 | C→T | 7.0% | G16S (GGC→AGC) | PP_1191 ← | S4 domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,366,654 | 0 | C | T | 7.0% | 162.4 / 2.6 | 57 | G16S (GGC→AGC) | PP_1191 | S4 domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base C (26/27); new base T (2/2); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 |
ACCGGCTCCAGGGTTTCGGCACGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCATTTTGGACACATAG > NC_002947/1366509‑1366796 | aCCGGCTCCAGGGTTTCGGCACGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTCAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAg < 7:6872/149‑1 (MQ=255) cGGCTCCAGGGTTTCGGCACGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAgct > 1:94965/1‑149 (MQ=255) cAGGGTTTCGGCACGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTAGCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTc < 7:292398/147‑1 (MQ=255) cAGGGTTTCGGCACGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCTCGGCTGCTcc < 8:20115/148‑2 (MQ=255) cAGGGTTTCGGCACGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGa > 1:193632/1‑149 (MQ=255) aGGGTTTCGGCACGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGGCCTGCGCGAt > 3:1369/1‑149 (MQ=255) gTTTCGGCACGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCTCGGCTGCTcccgccg < 3:81137/149‑7 (MQ=255) aCGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTg > 8:92609/1‑148 (MQ=255) gcCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGc < 5:273383/149‑1 (MQ=255) cccGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCg < 8:273677/149‑1 (MQ=255) cGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGa < 2:193632/149‑1 (MQ=255) ggCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGAc > 5:123555/1‑149 (MQ=255) gcagcaGCGCGTCGAGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACg > 2:287336/1‑149 (MQ=255) agcagcGCGTCGAGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACggg > 5:150433/1‑149 (MQ=255) gcagcTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGt > 1:233835/1‑149 (MQ=255) gcagcGCGTCGAGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGt < 1:287336/149‑1 (MQ=255) agcGCGTCGAGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTc < 6:150433/149‑1 (MQ=255) gcTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCg > 5:233314/1‑149 (MQ=255) gcTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCg < 1:135052/149‑1 (MQ=255) tgctCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAAtt < 2:94965/149‑1 (MQ=255) aaCCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTA‑CCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑Tgg > 6:38800/1‑136 (MQ=255) aaCCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTA‑CCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑Tgg < 5:38800/136‑1 (MQ=255) aCCTTGAACTGCGGCTGCTCGACCACCACGACATCGACCGTTACCCAGCCTCCTTCAATGTTCTGCTCTGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCTCAAg < 1:194465/149‑1 (MQ=255) ccTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAgg > 6:110476/1‑149 (MQ=255) gAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACACAGCCTCCATCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGCCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGAAAGGCAgg > 4:69752/1‑149 (MQ=255) gAACTGCGGCTGCTCGACCACCACGCCATAGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGTCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAg < 7:17221/148‑1 (MQ=255) cTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGaa < 1:106498/149‑1 (MQ=255) gACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGATGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTg < 7:70475/149‑1 (MQ=255) gACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCAtt < 5:110476/148‑1 (MQ=255) gACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCAt < 2:233835/147‑1 (MQ=255) accaccACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGt < 7:143035/149‑1 (MQ=255) cacGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCAt < 1:197600/141‑1 (MQ=255) cacGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCAt > 2:197600/1‑141 (MQ=255) gACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGc > 6:171958/1‑149 (MQ=255) ccGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGAGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCgg < 3:69752/149‑1 (MQ=255) cccAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCCAGCTGCTCCATGAGGCGTTTTGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTAGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAgat > 1:165570/1‑148 (MQ=255) ccAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGGGCCGCCCCCCGGGGGGATGTGGCGGTTGGTGAGGCGGCCGGGGGGGGGCAGTGGGGGAA‑TATCAAAGCAGGGGAAAGCGACGATAGTAACAGCCGGCAAGCGGTAgatta > 2:319868/1‑147 (MQ=255) cAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAgatgat < 7:92609/149‑1 (MQ=255) cAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAgatgat > 4:74093/1‑149 (MQ=255) gCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATgg < 5:171958/149‑1 (MQ=255) tGTACTGCTCGGCCTCGGGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGGTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGGGGt < 5:290144/129‑1 (MQ=255) tGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTc < 4:1369/149‑1 (MQ=255) agTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCACGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAACGCAGGGAAAGGCCTCCATTTTACCAGCCAGCAAGCCGt > 6:290144/2‑129 (MQ=255) gCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATgc > 5:18069/1‑149 (MQ=255) cTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTAGCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATgc < 2:135850/148‑1 (MQ=255) cTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATgcg > 6:302967/1‑149 (MQ=255) cTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGAAGAGGCGTTTGGACAGGCGGACGGGTTCGGAGA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATgcg > 4:297686/1‑149 (MQ=255) ggCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCa > 8:145166/1‑149 (MQ=255) gCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCAt > 4:213680/1‑149 (MQ=255) tCGCGGCGGGGGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCAtttt > 1:321246/1‑149 (MQ=255) gcggcgGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCAtttt < 5:302967/147‑1 (MQ=255) gcggcgGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCATTTTg < 6:123555/148‑1 (MQ=255) tcatcgAGCAGCTCGGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCATTTTGGa > 5:79925/6‑148 (MQ=255) atcgAGCAGCTCGGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCATTTTGGaca > 8:114581/4‑148 (MQ=255) ggggcagcCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCATTTTGGACACAt < 2:321246/146‑1 (MQ=255) gAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCATTTTGGAcaca > 3:109001/1‑147 (MQ=255) agcagcCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCATTTTGGACACATAg > 2:223739/1‑149 (MQ=255) | ACCGGCTCCAGGGTTTCGGCACGGGCGCCCGGCAGCAGCTCGACGCGCTGCTGCTCAACCTTGAACTGCGGCTGCTCGACCACCACGCCATCGACCGTTACCCAGCCTCCTTCAATGTACTGCTCGGCCTCGCGGCGGGAGCAGCCGAGCTGCTCGATGAGGCGTTTGGACAGGCGGACGGGTTCGGACA‑TGGGGCAATTCGCAAGGCAGGGAAAGGCCTCCATTGTACCTGCCTGCAAGCGGTAGATGATGGGAATCTGTGTCAGATGCGCCATTTTGGACACATAG > NC_002947/1366509‑1366796 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |