Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,536,271 | A→G | 7.3% | intergenic (+62/‑94) | argJ → / → PP_1347 | glutamate N‑acetyltransferase/amino acid acetyltransferase/glutathione S‑transferase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,536,271 | 0 | A | G | 7.3% | 154.5 / 2.8 | 55 | intergenic (+62/‑94) | argJ/PP_1347 | glutamate N‑acetyltransferase/amino acid acetyltransferase/glutathione S‑transferase family protein |
Reads supporting (aligned to +/- strand): ref base A (29/22); new base G (2/2); total (31/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 |
CTGGGCCGTGGCCAGTGCAGCGAAACCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTACTCCTCCTGGTCGCTGCGTG > NC_002947/1536123‑1536419 | cTGGGCCGTGGCCAGTGCAGCGAAACCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCTGCTCCCACAGGTGTTGCAATGCCTGCa < 3:121907/149‑1 (MQ=255) gCCAGTGCAGCGAAACCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCTGCAGGCATTGCAACACCTGTGGGAgcgggc < 1:271203/148‑3 (MQ=38) ccAGTGCAGCGAAACCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAgcggtgcg < 7:16003/149‑1 (MQ=255) cAGCGAAACCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCTGCAGGCATTGCAACACCTGTGGGAgcgggc > 4:237634/1‑139 (MQ=38) cAGCGAAACCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCTGCAGGCATTGCAACACCTGTGGGAgcgggc < 3:237634/141‑3 (MQ=38) aGCGAAACCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGCTCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTg > 4:99068/1‑149 (MQ=255) cGAAACCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTa < 6:227180/149‑1 (MQ=255) aaCCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAg > 4:299022/1‑147 (MQ=255) aaCCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAg > 2:59525/1‑147 (MQ=255) aaCCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGa < 3:171368/149‑1 (MQ=255) aCCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGa > 7:187894/1‑148 (MQ=255) aCCTGTCCCAAGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCAGCGa > 2:196845/1‑148 (MQ=255) ccTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGaaa < 3:299022/149‑1 (MQ=255) cTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAg > 2:39045/1‑149 (MQ=255) tGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAgg > 8:219446/1‑149 (MQ=255) cACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCcgcg > 2:234268/1‑149 (MQ=255) cGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCg < 2:267521/146‑1 (MQ=255) cGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCg > 1:267521/1‑146 (MQ=255) tGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAgcggtg > 3:93640/1‑100 (MQ=255) tGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTg > 2:37293/1‑149 (MQ=255) gATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCTGCGCGGCCtttcgc < 1:39045/149‑6 (MQ=255) aCGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTg > 3:263045/1‑149 (MQ=255) gCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGAGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGc > 1:303813/1‑148 (MQ=255) cGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAg < 7:286724/149‑1 (MQ=255) gAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGa < 3:268941/149‑1 (MQ=255) gtaccTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCt > 3:280555/1‑149 (MQ=255) ccTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGa < 1:196845/148‑1 (MQ=255) aTCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAAc < 1:234268/147‑1 (MQ=255) ccGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCAt > 8:91859/1‑148 (MQ=255) cGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGa < 7:136956/149‑1 (MQ=255) gAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAg > 7:230510/1‑149 (MQ=255) gCCTCTTCGCGGTCACGCCCGCTCCCACAGGTGTTGCAATGCCTGGAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTAt < 8:187894/149‑1 (MQ=255) cgcgGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCt < 5:243345/147‑1 (MQ=255) gcgGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGat < 4:263045/149‑1 (MQ=255) gCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGatcatc < 8:230510/149‑1 (MQ=255) cACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCg > 7:218134/1‑149 (MQ=255) cgcaccGCTCCTGCAGGCATTGCAACACCTGTGGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCgg > 7:62663/5‑149 (MQ=38) aCGCCCGCTCCCACAGGTGTTGGAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCgg > 7:203093/1‑149 (MQ=255) cGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGc < 7:91859/149‑1 (MQ=255) gCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGc > 4:225278/1‑148 (MQ=255) ccGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGa > 4:13759/1‑148 (MQ=255) cGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGAc > 7:191000/1‑148 (MQ=255) ccACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCt < 3:13759/148‑1 (MQ=255) ccACAGGTGTTGCAATGCCTGCAGCAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTg > 5:195508/1‑149 (MQ=255) cacaGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTg > 1:159286/1‑148 (MQ=255) acaGGTGTTGCAATGCCTCCAGGACCGGAGCGCTCCCTGTAGGACCGGGCTTGCCAGCGAAAGCCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATCAGCGATCACCTGATCATCGCCGACAAGCTGt > 5:192901/1‑148 (MQ=255) gtgtTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTActcc > 7:16914/1‑149 (MQ=255) ttGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTACtcctcc < 3:225278/149‑1 (MQ=255) tGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTACTcctcct > 3:120009/1‑149 (MQ=255) gCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCAAGAGCTATCACCTGATCATCGGCGACAAGCTGTACTCCTCATg > 7:184457/1‑149 (MQ=255) cAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGTAAGACAAACCTGATGGAGCCGAACCATGAg < 6:254234/109‑1 (MQ=255) cAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAg > 5:254234/1‑109 (MQ=255) cAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTACTCCTCCTg < 2:16782/148‑1 (MQ=255) cAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTACTCCTCCTg < 6:101211/148‑1 (MQ=255) ccTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTACTCCTCCTGGTCGCt > 6:290797/1‑149 (MQ=255) cAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTACTCCTCCTGGTCGCTGCGt < 2:159286/149‑1 (MQ=255) aGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTACTCCTCCTGGTCGCTGCGTg < 8:191000/149‑1 (MQ=255) | CTGGGCCGTGGCCAGTGCAGCGAAACCATCTGGACGACTGACCTGTCCCACGAGTACGTGAAGATCAACGCCGAGTACCGTACCTGATCTACTGATCCGAAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTTGCAATGCCTGCAGGAGCGGTGCGGTCCCTGTAGGAGCGGGCTTGCCCGCGAAAGGCCGCGCAGCGGCCTGCGGGTTTTGCAAGACAAACCTGATGGAGCCGAACCATGAGCTATCACCTGATCATCGGCGACAAGCTGTACTCCTCCTGGTCGCTGCGTG > NC_002947/1536123‑1536419 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |