Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,584,491 | C→G | 8.6% | G175R (GGG→CGG) | PP_1388 ← | EmrB/QacA family drug resistance transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,584,491 | 0 | C | G | 8.6% | 174.4 / 7.2 | 58 | G175R (GGG→CGG) | PP_1388 | EmrB/QacA family drug resistance transporter |
Reads supporting (aligned to +/- strand): ref base C (24/29); new base G (3/2); total (27/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.49e-01 |
CTGGCCCACCAAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTCGCGCGGGGGCACGAAG > NC_002947/1584348‑1584636 | ctggcccACCAAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCg > 5:43396/1‑149 (MQ=255) gcccACCAAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCa < 8:223545/149‑1 (MQ=255) gcccACCAAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCa < 6:214482/149‑1 (MQ=255) aaGGTGATGCCCAGCAGCATGATGCCAATGCCGATAATCAACATCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCTGCCGCTGGGGCTGGTTgct < 2:126714/149‑3 (MQ=255) aaGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGAt < 1:145275/149‑1 (MQ=255) aGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATc < 3:128872/149‑1 (MQ=255) aGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATc < 3:133673/149‑1 (MQ=255) aGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATc < 5:180672/149‑1 (MQ=255) gTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGTCCCAGCGGCAGGTTGATCCa < 2:17208/149‑1 (MQ=255) tGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCg < 6:132661/135‑1 (MQ=255) tGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAg < 5:305006/149‑1 (MQ=255) tGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGAATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCg > 5:132661/1‑135 (MQ=255) gATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAg > 8:41200/1‑148 (MQ=255) aTGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGaa < 3:299011/149‑1 (MQ=255) cagcagcagGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACAcc > 5:285148/1‑148 (MQ=255) agcagGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAgcg > 3:199738/1‑149 (MQ=255) agGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCa < 4:199738/149‑1 (MQ=255) cAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCa < 7:59243/117‑1 (MQ=255) cAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCa > 8:59243/1‑117 (MQ=255) ggCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTAc > 7:124038/1‑149 (MQ=255) cGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCg > 2:288364/1‑149 (MQ=255) aaCAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAAc > 1:151708/1‑147 (MQ=255) aCAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCTGCCGCTGGGGCTGGTTgc < 7:15043/108‑2 (MQ=255) aCAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCTGCCGCTGGGGCTGGTTgc > 8:15043/1‑107 (MQ=255) aCAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAg < 8:124038/149‑1 (MQ=255) aTGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAgccgcc < 7:41200/149‑1 (MQ=255) gcCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGCCAGGAACTCGGTCAACCAGCCGCCCAGCa > 8:235532/1‑149 (MQ=255) gTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCg < 6:285148/148‑1 (MQ=255) cACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGACCCGGCCa > 3:207736/1‑149 (MQ=255) cTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAAc > 5:295977/1‑121 (MQ=255) cTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAAc < 6:295977/121‑1 (MQ=255) gtgCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTg > 1:312417/1‑149 (MQ=255) tgCCTCCCGCCGCCGCACTGGCATCGCACCGAGCGCACGGCGAATGGCCCACACAGCAACCAGCCCCAGCGGCAGGGTGATCCAGAACACCCCCCGCCACGACCGGTACTCGGGCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTgg < 6:230976/149‑1 (MQ=255) cgacgCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGAGCCAGAACACCCAGCGCCTCGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCgcggc < 1:303512/149‑1 (MQ=255) gacgCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGc < 5:173617/128‑1 (MQ=255) gacgCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGc > 6:173617/1‑128 (MQ=255) gacgCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCgcggcg > 2:252451/1‑149 (MQ=255) gacgCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCgcggcg < 2:151708/149‑1 (MQ=255) gCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTa > 2:20602/1‑148 (MQ=255) cACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACAtg < 6:282062/148‑1 (MQ=255) tGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAg < 1:288364/149‑1 (MQ=255) agcgagcgCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGc > 1:5147/1‑149 (MQ=255) gcgagcgCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGcc > 7:60273/1‑149 (MQ=255) cACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTAc > 7:277727/1‑125 (MQ=255) cACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTAc < 8:277727/125‑1 (MQ=255) tGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGt > 2:99601/1‑149 (MQ=255) gCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTc > 2:302645/1‑149 (MQ=255) cccACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTcg > 8:54078/1‑149 (MQ=255) ccACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTcgc < 1:20602/149‑1 (MQ=255) cacaAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCg > 2:254884/1‑90 (MQ=255) cacaAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCg < 1:254884/90‑1 (MQ=255) ggatcAACCTGCCGCTGGGGCTGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTCGCGCgg > 7:179095/5‑149 (MQ=255) gatcAACCTGCCGCTGAGGCTGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTCGCGCggg > 8:101860/4‑149 (MQ=255) aaGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGaa < 4:107593/118‑1 (MQ=255) aaGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGaa > 3:107593/1‑118 (MQ=255) aGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTCGCGCgggg < 1:214118/149‑1 (MQ=255) cAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTCGCGCGGGGGc < 1:99601/149‑1 (MQ=255) gCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTCGCGCGGGGGCACGAAg < 2:5147/149‑1 (MQ=255) | CTGGCCCACCAAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCAGGTTGATCCAGAACACCCAGCGCCACGACAGGTACTCGGTCAACCAGCCGCCCAGCACTGGCCCGGCCACGCTGGCCGCGGCGTACATGCTGCTGAAGTAGCCCTGGTAGCGGCCGCGTTCGCGCGGGGGCACGAAG > NC_002947/1584348‑1584636 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |