Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 170,838 | G→T | 8.3% | intergenic (+19/‑551) | PP_0159 → / → PP_16SA | family III CoA‑transferase/16S ribosomal RNA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 170,838 | 0 | G | T | 8.3% | 156.3 / 4.4 | 56 | intergenic (+19/‑551) | PP_0159/PP_16SA | family III CoA‑transferase/16S ribosomal RNA |
Reads supporting (aligned to +/- strand): ref base G (24/27); new base T (3/2); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.64e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.30e-01 |
GAGACGCCAGTGGAGTATCGCCGGGCGCCACCACTGCTGGGCGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGTTAAGTAGTTA > NC_002947/170694‑170983 | gagaCGCCAGTGGAGTATCGCCGGGCGCCACCACTGCTGGGCGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGTGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAg < 8:130148/149‑1 (MQ=255) cAGTGGAGTATCGCCGGGCGCCACCACTGCTGGGCTAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCTGACGGCCTccc < 8:225715/149‑1 (MQ=255) gAGTATCGCCGGGCGCCACCACTGCTGGGCGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCtt > 2:7704/1‑149 (MQ=255) cGCCGGGCGCCACCACTGCTGGGCGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGtttt > 8:282929/1‑149 (MQ=255) ccGGGCGCCACCACTGCTGGGCGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCACGCCTACCCGc > 6:266240/1‑139 (MQ=255) ccGGGCGCCACCACTGCTGGGCGAGCATACCCAAGTGGTGCTGGGGTAAGTGTTGGGGCTGGATGCTGGCGAGGAACACCGTCTGCGTCATGCTGGGGTGCTCTATA‑TTAAAAGCGGGCAGCCCGTCAGGCCTCCCCGc < 5:266240/139‑1 (MQ=255) caccacTGCTGGGCGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTa > 7:144045/1‑148 (MQ=255) atgctgGGCGAGAATACCTAAGTGGTGCTGGGGTAATTGTTGGGGCTGGTTGGTGGGGCGGTACAGCGGCTGCGTGCTGCTGTGGGGATTTAGT‑TGAAATGCGGTGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAg < 6:107633/148‑1 (MQ=255) tgctgGGCGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAgg > 7:146013/1‑149 (MQ=255) ctgGGCGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGt > 6:258979/1‑148 (MQ=255) cGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTg > 4:60134/1‑148 (MQ=255) aGCATACCGAAGTGGTGCTGGGGGAAGTGTGGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGaaa < 7:282929/149‑1 (MQ=255) tACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGAGCTATGAAAGGTTATTGATATTa > 4:101800/1‑148 (MQ=255) tACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGGCAGGCCAACCCGCATTTTTTTTTAGCGCAATGAAATGTAATTGAAATTa > 6:116597/1‑148 (MQ=255) ccGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTaaa < 8:144045/148‑1 (MQ=255) ccGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTaaa < 5:258979/148‑1 (MQ=255) cGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAgg > 4:260448/1‑149 (MQ=255) gtggtgCTGGGGGAAGTGTTGGGGCTGTATGCTGGCTAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGa < 5:306303/149‑1 (MQ=255) cTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTACTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCct > 4:246798/1‑149 (MQ=255) tGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TCAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCctc < 2:243430/149‑1 (MQ=255) ggggAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCtctc > 4:278340/1‑149 (MQ=255) tgtTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATccc < 3:260448/149‑1 (MQ=255) gtTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTACTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATccc < 3:246798/148‑1 (MQ=255) ggggCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCGGTGTTTTTCAGCGCGTTCAAAGGTAATTGCAAGTAAAGGTTGACGCCCTCTCGAATCGCCGta > 4:297723/1‑149 (MQ=255) gggCTGGTTGGTTGCGACGTACAGCGTCGGCGTGATGCTGGGGTGCTCTAGA‑TTAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTta < 8:146013/148‑1 (MQ=39) ggatGGATGCTGGGGTTGTACAGCGTCGTCGTGATGCTGGGGTGCTCTTGT‑TGAAAAGCGGGGAGGCCTTCAGGCCGCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTTATTGAAATTAAAGGTTGACGCGCTCTCGAATCCCCTtata < 7:228618/146‑1 (MQ=37) cGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGAGCCCTATAAAAGGTAATTGAAATTAAAGGTTGACGCCCTATCGAATCCCCTTATAAAGCGCCacaca > 5:42636/1‑147 (MQ=38) tACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑g < 3:60134/148‑1 (MQ=255) aCAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCACCCCGCTTTGTTTTTAAGCGCAATCAAAGGTAATTTAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCCCCCCCCTTCCA‑Gc > 2:76845/1‑148 (MQ=38) cAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGa > 5:248149/1‑149 (MQ=255) cgCGTCTGGTTTATGCTGGGGTTCTATAGA‑TTAAAAGCGGGGAGGCCGTCTGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTc < 1:311009/141‑1 (MQ=37) gTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATc < 6:248149/149‑1 (MQ=255) tCTGCGTGATGCTGGGGTGCTCTAGATTGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATc > 1:174672/1‑149 (MQ=255) tGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATc < 8:91218/110‑1 (MQ=255) tGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATc > 7:91218/1‑110 (MQ=255) tGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCT‑GCGACATCGGAACGAAAAACTCCTTg < 1:7704/149‑1 (MQ=255) aGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCGTTGTTTTTGAGCGCTTTGAAAGGTAATTGATATTAAAGGTTGTCGCCCTGTCGAATACCCATATAATTCGCCCCACTTGCA‑GCGCGATCGGGACGAAAAACTCCTTGAGAtt > 8:54575/1‑148 (MQ=21) gA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTc < 2:105214/148‑1 (MQ=255) gA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCGTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTGTCGAATGCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTc > 5:297244/1‑148 (MQ=255) a‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCaa < 6:101320/149‑1 (MQ=255) tGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCaa < 2:174672/148‑1 (MQ=255) tGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAAt < 7:54575/149‑1 (MQ=255) aaaGCGGGCAGGCCGTCAGGCCTCCCAGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCTAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAg < 5:116597/149‑1 (MQ=255) aaGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCGCTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGt > 5:240282/1‑149 (MQ=255) aGCGGGGAGGCCTGACGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTAACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGt > 5:243377/1‑148 (MQ=18) ggggAGGCCTGACGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGTTAag > 2:93834/1‑149 (MQ=255) ggggAGGCCTGACGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGTTAag > 7:97588/1‑149 (MQ=255) ggggAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGTTAag < 3:278340/149‑1 (MQ=255) gggAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGTTAag > 3:119960/1‑148 (MQ=255) gggAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGTTAag < 4:119960/148‑1 (MQ=255) ggAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGaa > 6:327243/1‑116 (MQ=255) ggAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGaa < 5:327243/116‑1 (MQ=255) aGGCCGTCAGCCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACACCTTGAGATTCAATGAGTTAagtagt < 6:42636/149‑1 (MQ=255) ggCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTgag > 2:82420/1‑129 (MQ=255) ggCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTgag < 1:82420/129‑1 (MQ=255) ccGTCAGGCCTCCCCGCTTTGTTTTTCATCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCATGCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGTTAAGTAGTTa < 1:76845/149‑1 (MQ=255) | GAGACGCCAGTGGAGTATCGCCGGGCGCCACCACTGCTGGGCGAGCATACCGAAGTGGTGCTGGGGGAAGTGTTGGGGCTGGATGCTGGCGAGGTACAGCGTCTGCGTGATGCTGGGGTGCTCTAGA‑TGAAAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTCAGCGCTATCAAAGGTAATTGAAATTAAAGGTTGACGCCCTCTCGAATCCCCTTATAATGCGCCCCACTTCCA‑GCGACATCGGAACGAAAAACTCCTTGAGATTCAATGAGTTAAGTAGTTA > NC_002947/170694‑170983 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |