Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,693,685 C→G 8.8% P52A (CCT→GCT) ‡ PP_1489 → CheW domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,693,6850CG 8.8% 203.4 / 9.2 68P52A (CCT→GCT) ‡PP_1489CheW domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (32/30);  new base G (3/3);  total (35/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.58e-01

TTGCAACTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTGCAGCTTGGC  >  NC_002947/1693541‑1693831
                                                                                                                                                |                                                                                                                                                  
ttGCAACTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCAcctgc                                                                                                                                                >  2:35878/1‑149 (MQ=255)
ttGCAACTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCAcctgc                                                                                                                                                >  8:241234/1‑149 (MQ=255)
  gCAACTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCAcctgc                                                                                                                                                <  8:169674/147‑1 (MQ=255)
    aaCTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTgg                                                                                                                                            >  1:246535/1‑149 (MQ=255)
     aCTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCAGGTGCCTggg                                                                                                                                           <  5:169358/149‑1 (MQ=255)
     aCTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTggg                                                                                                                                           >  5:319239/1‑149 (MQ=255)
      cTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCAGGTGCCTgggc                                                                                                                                          <  8:78836/149‑2 (MQ=255)
      cTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGt                                                                                                                                          >  1:65354/1‑149 (MQ=255)
      cTGCGCACCGCGCGGGCGGCGAACCCCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCATGCCGATCGCCCAGGCAGGTGCCTgggc                                                                                                                                          <  7:203661/149‑2 (MQ=255)
           cACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCgg                                                                                                                                     <  5:316189/149‑1 (MQ=255)
           cACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGGGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCgg                                                                                                                                     <  7:162812/149‑1 (MQ=255)
            aCCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCggg                                                                                                                                    >  2:240599/1‑149 (MQ=255)
            aCCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCggg                                                                                                                                    <  8:105477/149‑1 (MQ=255)
                   gggCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATtc                                                                                                                               <  3:270345/147‑1 (MQ=255)
                       ggcgAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGcc                                                                                                                          >  2:20473/1‑148 (MQ=255)
                               ccGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGc                                                                                                                 <  2:65354/149‑1 (MQ=255)
                                cGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGAGCGAAGTGTTGCCGGGTCAGCCGATCAAGCCGAGCGCCCAGCCACCTCCCTGGGTCGCGGGCATTCTCGCCCTGCGTGGc                                                                                                                 >  4:53132/1‑148 (MQ=255)
                                          ttGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTcc                                                                                                      <  8:155005/149‑1 (MQ=255)
                                               ccTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCa                                                                                                 <  1:240599/149‑1 (MQ=255)
                                               ccTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCa                                                                                                 >  6:183421/1‑149 (MQ=255)
                                               ccTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCa                                                                                                 >  4:148722/1‑149 (MQ=255)
                                                cTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCAt                                                                                                >  2:29861/1‑149 (MQ=255)
                                                 tGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATc                                                                                               >  5:23019/1‑149 (MQ=255)
                                                   cAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATc                                                                                               <  3:148722/147‑1 (MQ=255)
                                                         cGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTg                                                                                        <  6:319239/148‑1 (MQ=255)
                                                           cATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTgccg                                                                                     >  6:283217/1‑149 (MQ=255)
                                                               agagCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCtt                                                                                 <  7:241234/149‑1 (MQ=255)
                                                                gagCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTg                                                                                <  1:35878/149‑1 (MQ=255)
                                                                    gcAGCGTTTTGCCCTGAGCGTGCACGAGGTGATTGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCt                                                                            >  2:113879/1‑149 (MQ=255)
                                                                    gcAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGGGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCt                                                                            <  3:53132/149‑1 (MQ=255)
                                                                     cAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCtt                                                                           >  3:317424/1‑149 (MQ=255)
                                                                      aGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCttt                                                                          >  3:21807/1‑149 (MQ=255)
                                                                       gCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTg                                                                         >  3:290286/1‑149 (MQ=255)
                                                                        cGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTgg                                                                        <  4:21807/149‑1 (MQ=255)
                                                                                ccTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCcgg                                                                >  6:243301/1‑149 (MQ=255)
                                                                                       gTGCACGAGGTGATTGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCa                                                         <  1:113879/149‑1 (MQ=255)
                                                                                         gCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAAc                                                       <  3:239935/149‑1 (MQ=255)
                                                                                         gCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAAc                                                       >  3:120182/1‑149 (MQ=255)
                                                                                           tcGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTg                                                           <  8:209022/142‑1 (MQ=255)
                                                                                           aagAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTg                                                           >  7:209019/3‑143 (MQ=255)
                                                                                           aCGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTg                                                           <  8:209019/143‑1 (MQ=255)
                                                                                           aCGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCagctc                                                     >  7:209022/1‑145 (MQ=255)
                                                                                                gTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCa                                                 <  6:23019/148‑1 (MQ=255)
                                                                                                gTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAg                                                >  3:233586/1‑149 (MQ=255)
                                                                                                    tCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCAcc                                            <  5:283217/149‑1 (MQ=255)
                                                                                                     cGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCAccc                                           >  3:240478/1‑149 (MQ=255)
                                                                                                     cGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCAAAAACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCAccc                                           >  1:268089/1‑149 (MQ=255)
                                                                                                       aaGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGCTCGCGGCCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCCACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGc                                         >  8:180974/1‑149 (MQ=255)
                                                                                                            ttGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGTCGGTGCAACGCACCAGCACCCGCctggt                                    <  1:20473/149‑1 (MQ=255)
                                                                                                             tGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCAcc                                            <  1:122654/140‑1 (MQ=255)
                                                                                                             tGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCAcc                                            >  2:122654/1‑140 (MQ=255)
                                                                                                                cgcgTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCctggtgctg                                <  4:120182/149‑1 (MQ=255)
                                                                                                                 gcgTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCctagtgctgg                               <  2:246535/149‑1 (MQ=255)
                                                                                                                   ggcAGCCGGTCAAGCCGATGGCCCAGGCTCGTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGTCCAGCTGGTTCCGGTCATCGACCTTGGCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCctggtgctggtg                             <  3:13375/147‑1 (MQ=255)
                                                                                                                   gTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCctggtgctggtg                             <  5:179832/149‑1 (MQ=255)
                                                                                                                    tCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCAGGCgggtgctggtgc                            <  5:183421/149‑1 (MQ=255)
                                                                                                                       gCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCAc                          >  1:213678/1‑148 (MQ=255)
                                                                                                                        ccGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAACTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTa                        >  3:269877/1‑149 (MQ=255)
                                                                                                                              aaGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAgg                  >  6:714/1‑149 (MQ=255)
                                                                                                                              aaGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAgg                  <  4:240478/149‑1 (MQ=255)
                                                                                                                                   gATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCa                                                 <  7:294448/113‑1 (MQ=255)
                                                                                                                                   gATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCa                                                 >  8:294448/1‑113 (MQ=255)
                                                                                                                                      gacccAGGCAGGTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTg           >  1:287769/3‑148 (MQ=255)
                                                                                                                                      gacccAGGCAGGTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTGc          >  6:34501/3‑149 (MQ=255)
                                                                                                                                       gCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCGTCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTg           >  1:55580/1‑147 (MQ=255)
                                                                                                                                        cccAGGCAGGTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTGCAg        >  5:87153/1‑149 (MQ=255)
                                                                                                                                         ccAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGTCCTGCAGc       <  4:290286/149‑1 (MQ=255)
                                                                                                                                         ccAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTGCAGc       >  7:306205/1‑149 (MQ=255)
                                                                                                                                         ccAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTGCAGc       >  5:114850/1‑149 (MQ=255)
                                                                                                                                         ccAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTGCAGc       >  7:175516/1‑149 (MQ=255)
                                                                                                                                              cACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTGCAGCTTGGc  <  6:114850/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                  
TTGCAACTGCGCACCGCTCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAGCGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATTCTCGCCCATCGTGGCCAGCTGGTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTGCTGGTGCACTACCGAGGCGGCCTGCAGCTTGGC  >  NC_002947/1693541‑1693831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑