Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,790,528 A→G 11.5% K153R (AAG→AGG)  dxr → 1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,790,5280AG11.5% 131.4 / 7.8 52K153R (AAG→AGG) dxr1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
Reads supporting (aligned to +/- strand):  ref base A (25/21);  new base G (3/3);  total (28/24)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01

GATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTC  >  NC_002947/1790386‑1790673
                                                                                                                                              |                                                                                                                                                 
gATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTg                                                                                                                                              <  6:182914/148‑1 (MQ=255)
gATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGc                                                                                                                                             >  7:11205/1‑149 (MQ=255)
         aTGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAGGGGTGCCGtgctgct                                                                                                                                    >  5:283195/1‑149 (MQ=255)
         aTGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAGGGGTGCCGtgctgct                                                                                                                                    >  5:278036/1‑149 (MQ=255)
                ccATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATc                                                                                                                             >  4:40416/1‑149 (MQ=255)
                  aTTGTCGTTGGTGCAGGCGTGCTCCCCAGTCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGTCGAACAAGGAAGCAGTTGTTATGTCCGGCGGACTGTTCATGGAGGCGGTGCTGCAAAAGGGTGGCGtgctgcttc                                                                                                                                  <  8:183663/142‑3 (MQ=255)
                  aTTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGtgctgatgcaagatcg                                                                                                                           >  7:183663/1‑142 (MQ=255)
                           gctgcCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAaca                                                                                                                  >  6:96470/1‑149 (MQ=255)
                                    cTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTAt                                                                                                         <  2:254976/149‑1 (MQ=255)
                                     tGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATc                                                                                                        >  5:231863/1‑149 (MQ=255)
                                           ccACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAg                                                                                                  >  7:116060/1‑149 (MQ=255)
                                               gCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCa                                                                                              >  4:220888/1‑149 (MQ=255)
                                                        aGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGc                                                                                      >  2:136477/1‑148 (MQ=255)
                                                               gcaggcaAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGc                                                                              <  8:11205/149‑1 (MQ=255)
                                                                 aggcaAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGccc                                                                            <  7:182591/149‑1 (MQ=255)
                                                                    caAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAGGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTg                                                                         <  6:283195/149‑1 (MQ=255)
                                                                    caAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAGGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTg                                                                         <  6:278036/149‑1 (MQ=255)
                                                                     aagaagGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTgg                                                                        >  4:26645/1‑149 (MQ=255)
                                                                      agaagGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGc                                                                       >  2:26355/1‑149 (MQ=255)
                                                                        aagGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCt                                                                     <  3:40416/149‑1 (MQ=255)
                                                                          ggTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTg                                                                    <  7:112643/148‑1 (MQ=255)
                                                                                   ggCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCg                                                          >  2:220732/1‑149 (MQ=255)
                                                                                   ggCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGAGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGACCGTGGCCTGAGTGCCGTCg                                                          >  8:248655/1‑149 (MQ=255)
                                                                                    gCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCg                                                          <  1:124849/148‑1 (MQ=255)
                                                                                     ccAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGgt                                                        <  8:116060/149‑1 (MQ=255)
                                                                                      caacaaGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGgtg                                                       >  3:127091/1‑149 (MQ=255)
                                                                                       aacaaGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAGGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGgtgt                                                      >  3:233082/1‑149 (MQ=255)
                                                                                       aacaaGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGgtgt                                                      >  3:95961/1‑149 (MQ=255)
                                                                                       aacaaGGAAGCACTTGTGATGTACGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGgtgt                                                      >  7:219478/1‑149 (MQ=255)
                                                                                         caaGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTgc                                                    <  3:220888/149‑1 (MQ=255)
                                                                                             gAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCg                                                <  4:127091/149‑1 (MQ=255)
                                                                                             gAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGACGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTACAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTTCGCCg                                                >  3:191399/1‑149 (MQ=255)
                                                                                               aGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCgg                                               >  8:47216/1‑148 (MQ=255)
                                                                                                      gtgATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTg                                         <  8:81396/147‑1 (MQ=255)
                                                                                                      gtgATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTg                                         <  3:61646/147‑1 (MQ=255)
                                                                                                      gtgATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGc                                        <  8:219478/148‑1 (MQ=255)
                                                                                                               ggCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTc                              <  6:231863/149‑1 (MQ=255)
                                                                                                                gcgcACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTcc                             >  1:318462/1‑149 (MQ=255)
                                                                                                                    aCTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCcggcg                         >  4:92654/1‑149 (MQ=255)
                                                                                                                      tGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTgc                                                    >  2:26278/1‑120 (MQ=255)
                                                                                                                      tGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACAACGCCCGTGGCCTGAGTGCCGTCGGTGTgc                                                    <  1:26278/120‑1 (MQ=255)
                                                                                                                        ttCATGGATGCGTTGCGGAAATAGGGTGCAGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGc                      <  4:191399/148‑1 (MQ=255)
                                                                                                                          cATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACcgc                                 >  1:255530/1‑135 (MQ=255)
                                                                                                                          cATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACcgc                                 <  2:255530/135‑1 (MQ=255)
                                                                                                                            tGGAGGCGGTGCGGCAAAGGGGTGCCGTGCTGCTGCCGATCGAGAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGtt                  <  4:233082/148‑1 (MQ=255)
                                                                                                                            tGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTc                 >  3:247939/1‑149 (MQ=255)
                                                                                                                             ggAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTcc                >  4:309955/1‑149 (MQ=255)
                                                                                                                              gAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCcg               <  7:47216/149‑1 (MQ=255)
                                                                                                                                ggCGGTGCTGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCcgc              >  4:179707/1‑148 (MQ=255)
                                                                                                                                    gTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAAc         >  5:212003/1‑149 (MQ=255)
                                                                                                                                     tGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACg        <  3:92654/149‑1 (MQ=255)
                                                                                                                                        ggCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCg     <  1:220732/149‑1 (MQ=255)
                                                                                                                                           aaaaGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTc  <  3:309955/149‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                 
GATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTC  >  NC_002947/1790386‑1790673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑