Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,810,336 | C→A | 16.1% | intergenic (+97/‑72) | eno → / → ftsB | enolase/cell division protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,810,336 | 0 | C | A | 16.1% | 112.6 / 8.8 | 46 | intergenic (+97/‑72) | eno/ftsB | enolase/cell division protein |
Reads supporting (aligned to +/- strand): ref base C (20/18); new base A (5/3); total (25/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.10e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGCGCCAAAGCGGTTTACCGCGGTCGTGCCGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGCCTGTGGGTGGGT > NC_002947/1810195‑1810482 | ggCGCCAAAGCGGTTTACCGCGGTCGTGCCGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCa < 2:135254/147‑1 (MQ=255) cAAAGCGGTTTACCGCGGTCGTGCCGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCg < 3:39864/149‑1 (MQ=255) aGCGGTTTACCGCGGTCGTGCCGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGc < 7:248014/149‑1 (MQ=255) gTTTACCGCGGTCGTGCCGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGt < 4:158057/143‑1 (MQ=255) gTTTACCGCGGTCGTGCCGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGt > 3:158057/1‑143 (MQ=255) ccGCGGTCGTGCCGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCGAGGCCAGGCt > 4:148689/1‑134 (MQ=255) ccGCGGTCGTGCCGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCGAGGCCAGGCt < 3:148689/134‑1 (MQ=255) ccGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTa > 5:306110/1‑148 (MQ=255) aGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACaa < 1:259174/149‑1 (MQ=255) cTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑Ca < 7:95134/149‑1 (MQ=255) aGCAAGAGATGGTAAAAAGGCAGCATCCGTAGTTGTAGGAACGTTC‑GTTCTGAACTTTCCTACGTACTAACGGGTTTCTGTCGAAGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGcc < 4:163588/149‑1 (MQ=255) gCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCt > 2:252423/1‑149 (MQ=255) gCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCGAGGCCAGGCTTCGt < 4:242810/110‑1 (MQ=255) gCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCGAGGCCAGGCTTCGt > 3:242810/1‑110 (MQ=255) gCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCAGGGCTACGCCAGGCGAAGTGCTAATGGAGGCCCCGAAGTAAACAGTAAGCGG‑GAGCCt > 1:295860/1‑149 (MQ=255) gagaTGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGt < 5:21400/126‑1 (MQ=255) tAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTgg < 7:114701/149‑1 (MQ=255) tAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTg > 1:119538/1‑148 (MQ=255) aaaGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCAGGCCTAGGCCAGGCTTCGTGGTTTTAGAGGCCCCGAACTAACAAGTAAGCGG‑CAGCCTTTTTaaacgtgat > 6:177250/1‑141 (MQ=255) gcagcaGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGt < 2:119538/149‑1 (MQ=255) agcagcCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGa > 7:240829/1‑149 (MQ=255) cGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCa < 7:139307/149‑1 (MQ=255) gTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGGCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTa > 3:285754/1‑149 (MQ=255) tAGGAAAGTTCAGTAC‑GAACGTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTAt > 8:218142/1‑149 (MQ=255) ggAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTg < 8:213155/149‑1 (MQ=255) ggAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTAAGCGG‑CCGCCTTTTTAACCTGGATAACGTGATGCGCAGTcccgaatg > 6:294310/1‑144 (MQ=255) aCTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCAGGCCTCGGCCAGGCTTCGTGGTATTCGAGGCCCCGAAGTAACAAATAAGCGG‑GAGCCGTTTTTACCTGGATAACGTGATTCGCAGTCCCGATTGgttgttgagcg > 4:54612/1‑144 (MQ=255) aaCTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGGACAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGtt < 1:252423/148‑1 (MQ=255) aaCTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCt > 7:15836/1‑149 (MQ=255) gTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGt > 8:101863/1‑149 (MQ=255) tACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCACAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGtt > 8:86592/1‑149 (MQ=255) aCGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGGGCTATTAGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCGGGATAACGTGATGCGCAGTCCCGATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTg > 3:136677/1‑149 (MQ=255) tCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGc < 5:294310/148‑1 (MQ=255) cTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCa < 6:306110/148‑1 (MQ=255) tGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGGTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑GAGCCGTTTTAACCGGGATAACGTGCTGCGCCGTCCCTATTGGTTGTTCCTGGTTGTGCTCTTGCGGTTGGGTGGCCTGGAGt > 4:101572/1‑149 (MQ=255) gTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAAACTGGATAACGTGATGCGCAGTCCCTATTGGGTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGt > 3:184471/1‑148 (MQ=255) acgaAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGc < 5:177250/149‑1 (MQ=255) gaAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGCCt > 8:114824/1‑149 (MQ=255) gaAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGCCt > 3:108841/1‑149 (MQ=255) gaAGCCTGGCCGAGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGcc > 7:110382/1‑148 (MQ=255) gaAGCCTGGCCGAGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGcc < 8:110382/148‑1 (MQ=255) gCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGCCtgtg < 8:15836/149‑1 (MQ=255) ccTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGCCTgtgg < 7:218142/149‑1 (MQ=255) ccTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGCCTgtgg > 4:219246/1‑149 (MQ=255) ccTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGCCTGtgggtggg > 4:185989/1‑149 (MQ=255) tCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGCCTGTgggtgggt > 1:139830/1‑148 (MQ=255) | GGCGCCAAAGCGGTTTACCGCGGTCGTGCCGAGTTTCGCGGCTAAGCAAGAGATGGTAAAAAGGCAGCAGCCGGAGTTGTAGGAACGTTC‑GTACTGAACTTTCCTACGTACTAACGGGTTTCTGTCGACGAAGCCTGGCCTCGGCCAGGCTTCGTGCTATTCGAGGCCCCGAAGTAACAAGTACGCGG‑CAGCCTTTTTAACCTGGATAACGTGATGCGCAGTCCCTATTGGTTGTTCCTCGTTCTGCTCTTGCTGTTGGGTGGCCTGCAGTACCGCCTGTGGGTGGGT > NC_002947/1810195‑1810482 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |