| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,724 | A→G | 8.6% | V410V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,724 | 0 | A | G | 8.6% | 324.9 / 14.6 | 116 | V410V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (52/54); new base G (7/3); total (59/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 116 total aligned reads displayed.
CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAAC > NC_002947/195578‑195868 | cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAAc > 1:219878/1‑149 (MQ=37) tGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTGAcc > 2:306556/1‑149 (MQ=2) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTGACCGt < 7:258133/149‑1 (MQ=12) cccGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTGACCGTGa > 4:267983/1‑149 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTGCCCGTGa > 4:194190/1‑149 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTGACCGTGa > 4:190298/1‑149 (MQ=12) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGCCG‑CCGGAAACCGTg > 7:171410/1‑148 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTg > 6:328520/1‑148 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTGACCGTGac > 7:101473/1‑148 (MQ=9) cGAATCCGACCCCGGCTCAGACCACGATCAACTACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTGACCGTGacc < 8:111951/149‑3 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAAc < 6:299568/149‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAAc > 7:281875/1‑149 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAAc < 7:164106/149‑1 (MQ=255) cGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑c > 5:306497/1‑148 (MQ=255) ccgggCTCACACCAGCACCAACGACTCGGTCTACACCACTACCGCTACCATGACGGCTAGCCCGTCGGTCACCTATGGCACTCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAAc < 1:265273/146‑1 (MQ=11) tCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCCTGAACCTGT‑CCAACGGCCaaa > 4:247721/1‑149 (MQ=255) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCaaa < 1:32126/147‑1 (MQ=37) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAAc > 1:327500/1‑148 (MQ=37) gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGa < 3:67666/149‑1 (MQ=38) cGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTAcc > 3:113104/1‑149 (MQ=255) aTCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGt < 7:102994/149‑1 (MQ=39) aTCAACGACTCGGGCGACACCACCACCGCGACCCTGACGGTGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGt < 8:132756/149‑1 (MQ=255) aaCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACgg < 2:300346/131‑1 (MQ=40) aaCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACgg > 1:300346/1‑131 (MQ=40) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGa > 2:238709/1‑148 (MQ=255) gACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGc > 4:312974/1‑149 (MQ=39) gACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGc < 5:328520/149‑1 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCgg < 7:178781/149‑1 (MQ=255) cTCGGTCGACACCACCACCGCTACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCgg < 2:155565/149‑1 (MQ=255) gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTaa < 7:224288/149‑1 (MQ=255) ccactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 4:113104/149‑1 (MQ=255) ccactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 3:155011/149‑1 (MQ=255) ccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 8:171410/149‑1 (MQ=39) cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 3:140541/1‑149 (MQ=255) actaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg > 4:147195/4‑149 (MQ=255) ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTGACCGTGTCCCTGT‑c > 4:267064/1‑106 (MQ=255) ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTGACCGTGACCCTGT‑c < 3:267064/106‑1 (MQ=9) taccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa > 8:4781/2‑144 (MQ=39) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGCCG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg > 3:27359/1‑147 (MQ=255) accGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAg > 2:256015/1‑149 (MQ=39) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGc > 3:249656/1‑149 (MQ=39) gcgACCCTGACGGCGAGCCCGTCGGTCACCTAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGt < 3:27955/149‑1 (MQ=255) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACCATTACCGTTGAAGCGGCTAAAACCCACGGCAGCGt > 4:27955/1‑149 (MQ=255) gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATAACCGTTGAAGCGGGTAAAACCCAGGGAAGCGTc > 8:35369/1‑148 (MQ=255) ccTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGAtt > 7:111277/1‑149 (MQ=39) cTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGAttt < 3:312974/149‑1 (MQ=39) tGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACCCCGTGACCCTGAGCAAACCTGCCCAGCCG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAACCGATTACCGTTGAAGCGGGTAAACCCCAGGGCAGCGTCGATTTc > 5:324518/1‑149 (MQ=11) aCGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTTATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCa < 7:141194/149‑1 (MQ=255) cGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTTATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCa < 7:301949/148‑1 (MQ=255) ggCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGTAGCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCa < 1:93800/148‑1 (MQ=255) ggCGAGCCAGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGa > 7:231176/1‑149 (MQ=255) gAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGAccc > 3:52098/1‑149 (MQ=39) ccGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGc > 6:297221/1‑149 (MQ=39) cGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGc > 7:153035/1‑148 (MQ=39) tCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 8:111277/149‑1 (MQ=39) aCCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt > 1:225306/1‑149 (MQ=39) aCCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt > 3:290536/1‑149 (MQ=39) cGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGTCCGGTAACCGTGAACCTGT‑CCACCGGCCAAACGATTACCGTTGAACCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACgg > 1:81163/1‑147 (MQ=255) gAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTa < 4:52098/149‑1 (MQ=39) aaGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAAGGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTac < 2:243044/149‑1 (MQ=255) c‑ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTTAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaac < 1:238709/148‑1 (MQ=255) ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAcaacaa > 7:196419/1‑149 (MQ=39) gcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGAtt > 5:200950/1‑117 (MQ=255) gcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGAtt < 6:200950/117‑1 (MQ=255) gcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACaacaac > 3:213164/1‑149 (MQ=39) tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGAGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGc < 5:72446/149‑1 (MQ=255) gATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTCACGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTGCAGACCCCGGCCAATGCCGTCTACAAGAACGGCt > 8:207192/1‑149 (MQ=14) gATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGt < 8:254104/108‑1 (MQ=255) tCACTTACACCATGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTc > 6:165085/1‑148 (MQ=255) cACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGa > 6:251667/1‑149 (MQ=255) cTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGAGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGcc < 4:195161/122‑1 (MQ=255) ttACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCg > 2:15757/1‑149 (MQ=40) ttACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCg > 3:305539/1‑149 (MQ=40) acacCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGt < 6:324518/148‑1 (MQ=39) cacCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTc < 5:251667/148‑1 (MQ=39) acCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCgg > 7:233622/1‑79 (MQ=255) acCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCgg < 8:233622/79‑1 (MQ=255) acCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCAATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAg < 3:247721/149‑1 (MQ=255) ccGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGc < 4:249656/149‑1 (MQ=39) cGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCg > 3:44692/1‑149 (MQ=39) tGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTc < 4:290536/149‑1 (MQ=39) cccTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCAcc < 7:7892/149‑1 (MQ=39) cTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 2:159024/111‑1 (MQ=39) aGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATc < 2:225306/147‑1 (MQ=39) aGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCAGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATc < 4:87010/147‑1 (MQ=255) cAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCgaga < 2:81163/149‑1 (MQ=39) ccTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 4:34893/102‑1 (MQ=35) ccTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt > 3:34893/1‑102 (MQ=35) cccAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACt > 4:63205/1‑149 (MQ=38) ccAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTg > 6:190087/1‑149 (MQ=38) caaGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCCGGTAAAAACCAGGGCAGCGTCGATTTCAAGAACCAGGCCAATGACGTCTACAACAAACTCACTACCATCAGCTTCACCATAGACAGCGacacc > 8:246211/3‑147 (MQ=11) aGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTggc < 4:27359/149‑1 (MQ=39) aCG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGa < 2:54572/82‑1 (MQ=38) aCG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGa < 2:54574/82‑1 (MQ=38) aCG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGa > 1:54574/1‑82 (MQ=38) aCG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGACACCATCGAGAGCGCCACTggcgg > 4:243157/1‑149 (MQ=255) ccGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCaa < 4:213164/149‑1 (MQ=39) cGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGAttt > 7:179974/1‑73 (MQ=39) cGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGAttt < 8:179974/73‑1 (MQ=39) cGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAAc > 7:118230/1‑149 (MQ=39) | CTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACG‑CCGGTAACCGTGAACCTGT‑CCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAAC > NC_002947/195578‑195868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |