Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,255,975 | T→C | 10.5% | intergenic (+35/‑669) | asd → / → PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,255,975 | 0 | T | C | 10.5% | 90.4 / 3.3 | 38 | intergenic (+35/‑669) | asd/PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase |
Reads supporting (aligned to +/- strand): ref base T (20/14); new base C (2/2); total (22/16) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.97e-01 |
CGCAAGCTGAACATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTG > NC_002947/2255827‑2256122 | cgcAAGCTGAACATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGt > 6:299495/1‑149 (MQ=255) cAAGCTGAACATGGGGGCGCATGACCTGGGCGCGTTCACCGTGGGTGACCAGCTTCTGTTGGGCGCCGCCGAACCGCTGCGCCGCACCTGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGt < 1:256941/149‑1 (MQ=255) gAACATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGc > 4:292339/1‑149 (MQ=255) aCATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGTCACCAGTGCgg < 5:178411/149‑1 (MQ=255) cAGTACCTGGGCGCGTTCACCGTGGGTGGCCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTAt < 1:145638/149‑1 (MQ=255) aGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATg > 2:218946/1‑149 (MQ=255) ttCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCa < 2:227477/149‑1 (MQ=255) ttCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCa > 6:242311/1‑149 (MQ=255) tCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCAt > 2:134895/1‑149 (MQ=255) cGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTgg < 5:178522/149‑1 (MQ=255) gACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCgg > 4:102759/1‑149 (MQ=255) tgGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCg < 2:14652/149‑1 (MQ=255) gggCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGa < 1:134895/149‑1 (MQ=255) gccgAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGATAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCa > 8:64465/1‑149 (MQ=255) ccgcA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAAt < 3:102759/149‑1 (MQ=255) cgcA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATg < 1:218946/149‑1 (MQ=255) gATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCt > 4:22780/1‑149 (MQ=255) ctgCAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGa < 8:132265/149‑1 (MQ=255) tgGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGa > 7:35463/1‑148 (MQ=255) gCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACagag > 6:26512/1‑149 (MQ=255) gTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAgccgttgccg > 3:4548/1‑149 (MQ=255) ttCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAgccgttgccgt > 1:2142/1‑149 (MQ=255) ttCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAgccgttgccgt > 7:182548/1‑149 (MQ=255) aGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAgccgttgccgttgc > 7:222239/1‑149 (MQ=255) ttCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAgccgttgcggttgccgtt > 7:213170/1‑149 (MQ=255) gcataaaaaaaTACCGCACTGTCACCAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACa > 8:193441/7‑127 (MQ=38) gcataaaaaaaTACCGCACTGTCACCAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACa < 7:193441/121‑1 (MQ=38) aCCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGCGCCGTTGCCGTTGCCGttgct > 7:162338/1‑149 (MQ=255) tGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGttgctttt > 7:73779/1‑149 (MQ=255) aaaaaTACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGttgctttt < 8:213170/147‑1 (MQ=255) aaTACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGCGCCGTTGCCGTTGCCGttgcttttgcgtt > 4:71175/1‑149 (MQ=255) tACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGttgcttttgcttttg < 3:292339/149‑1 (MQ=255) aCCGCACTGTCACCAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTATTGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGttgcttttgcttttgc > 4:192661/1‑149 (MQ=255) ccGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGttgcttttgcttttgct > 6:34141/1‑149 (MQ=255) ccGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGttgcttttgcttttgc < 5:299495/148‑1 (MQ=255) ccGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGttgcttttgcttttgc < 5:242311/148‑1 (MQ=255) cGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGttgcttttg > 7:147751/1‑140 (MQ=255) gaaCTTGTTACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTc < 8:35463/147‑1 (MQ=255) cACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCt < 6:317349/149‑1 (MQ=255) gTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTg > 7:258487/1‑149 (MQ=255) | CGCAAGCTGAACATGGGGTCGCAGTACCTGGGCGCGTTCACCGTGGGTGACCAGCTGCTGTGGGGCGCCGCCGAACCGCTGCGCCGCA‑‑TGTTGCGGATTCTGCTGGAGCGTTGATCGTTCAGGCTTCACCTGAAAAATACCGCACTGGTGACAGTGCGGTATTTTTTTATGCCTGAAAGTATGCATTTGGGTCGCGGGCCTAATCGCCGGATAATTCATGCCGCTGTTTAATGGCGAAATGTCTGCTCTGACAGAGCCGTTGCCGTTGCCGTTGCTTTTGCTTTTGCTTCTAAGTG > NC_002947/2255827‑2256122 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |