Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,326,104 | T→G | 7.3% | K400N (AAA→AAC) | PP_2045 ← | metallo‑beta‑lactamase family protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,326,104 | 0 | T | G | 7.3% | 161.4 / 4.1 | 55 | K400N (AAA→AAC) | PP_2045 | metallo‑beta‑lactamase family protein |
Reads supporting (aligned to +/- strand): ref base T (22/29); new base G (2/2); total (24/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 |
CCCCCATCGCCGCCACGTAACGCTTGCCGGCCGCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAGGTAGTCGCGGATGGCCGCACCAC > NC_002947/2325956‑2326252 | cccccATCGCCGCCACGTAACGCTTGCCGGCCGCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCAt < 8:278588/149‑1 (MQ=255) tCGCCGCCACGTAACGCTTGCCGGCCGCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATttgctt < 7:252549/149‑1 (MQ=255) ccgccACGTAACGCTTGCCGGCCGCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGCCGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATttgcttgc > 7:231960/1‑148 (MQ=255) aaCGCTTGCCGGCCGCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCgcggc > 2:99932/1‑149 (MQ=255) gCTTGCCGGCCGCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGcggcgg > 6:283556/1‑148 (MQ=255) gCTTGCCGGCCGCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCggcggc > 3:11122/1‑149 (MQ=255) cTTGCCGGCCGCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCa < 1:327557/149‑1 (MQ=255) gccgCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGc < 3:267267/149‑1 (MQ=255) cTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAgg < 5:283556/149‑1 (MQ=255) ttGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAggg > 7:50912/1‑149 (MQ=255) gCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTc > 5:76355/1‑149 (MQ=255) ggTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTg < 2:288667/149‑1 (MQ=255) tGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAAttt < 2:110093/149‑1 (MQ=255) gTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGGCTGGGCAATTTCCa > 6:55300/1‑149 (MQ=255) tCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCgcggc < 7:176081/117‑1 (MQ=255) tCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCgcggc > 8:176081/1‑117 (MQ=255) gAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTTGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATgg < 7:38534/149‑1 (MQ=255) aGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATggg > 7:227708/1‑149 (MQ=255) ggCCGGGTTGCCGTCGTAGAACCCCATGTAGCTTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTc < 8:95216/148‑1 (MQ=255) ccGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTgg > 7:30566/1‑149 (MQ=255) gggTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGGCTGGGCAATTTCCATGGGGGTCTGGcc < 5:55300/149‑1 (MQ=255) ggTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGccc < 4:11122/149‑1 (MQ=255) ggTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGccc < 3:169212/149‑1 (MQ=255) ttGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCtg < 8:227708/149‑1 (MQ=255) gCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGGAGTAGTCGCGGATGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGCGGGTCTGGCCCtgat > 1:140911/1‑149 (MQ=255) cgtAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATgg > 1:296921/1‑129 (MQ=255) cgtAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATgg < 2:296921/129‑1 (MQ=255) caCCCCATCTACCGTTGATAGAAGTCCCTGACGTTATGGCTAACCGTGCCGTATTAGTCGCTGATGTACCTTTTGCTTGCCAGGGGCTTGGGCAGGCGGGCCTGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGgcg < 8:296610/148‑1 (MQ=255) cccATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTgg < 1:177924/129‑1 (MQ=255) cccATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTgg > 2:177924/1‑129 (MQ=255) ccATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAg < 8:50912/149‑1 (MQ=255) gATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTc < 1:99932/148‑1 (MQ=255) aGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGAt > 4:207795/1‑148 (MQ=255) cGGCCCTGCCGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAg < 4:254916/149‑1 (MQ=255) cGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAg < 3:207795/149‑1 (MQ=255) cGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAg < 8:231960/149‑1 (MQ=255) cGGCCCTGACGTTAGGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGGCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAg < 2:140911/149‑1 (MQ=255) gCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAgga > 2:17741/1‑148 (MQ=255) ccTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGca > 6:126064/1‑148 (MQ=255) ccTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGca > 6:120945/1‑148 (MQ=255) ttATGGCTAAGCGCTCCGTAGTAGTCTCGGCTGTACCATTAGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATc < 8:266917/149‑1 (MQ=255) aTGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATcgc > 4:290910/1‑149 (MQ=255) gcgactcGAGCCGTAGTAGTCTGGGCGTTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCgcgc < 4:175325/142‑1 (MQ=255) gCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGaa > 3:89657/1‑132 (MQ=255) gCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGaa < 4:89657/132‑1 (MQ=255) gCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGc > 8:193081/1‑147 (MQ=255) gtagtaGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAgg > 6:13872/1‑148 (MQ=255) tagtagTCGCGGCTGTACCAGTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAgg > 5:1975/1‑147 (MQ=255) tagtagTCGCGGCTGTACCAGTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAgg > 5:6335/1‑147 (MQ=255) tagtagTCGCGGCTGTACCAGTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAgg < 6:6335/147‑1 (MQ=255) tagtagTCGCGGCTGTACCAGTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAgg < 6:1975/147‑1 (MQ=255) gtagtCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAGGTAGt < 7:193081/149‑1 (MQ=255) gtCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAGGTAGTcgc > 5:274304/1‑149 (MQ=255) gtCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAGGTAGTcgc < 5:120945/149‑1 (MQ=255) gtCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGGCGGCCAGGTAGTcgc < 5:126064/149‑1 (MQ=255) cgGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAGGTAGTCGCGGAt < 7:115037/149‑1 (MQ=255) tttGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAGGTAGTCGCGGATGGCCGcaccac > 4:165362/1‑149 (MQ=255) | CCCCCATCGCCGCCACGTAACGCTTGCCGGCCGCTTGCGGTGGCAATGGGTCGAGGTTGGCCGGGTTGCCGTCGTAGAACCCCATGTAGCGTTGATAGACGGCCCTGACGTTATGGCTAAGCGAGCCGTAGTAGTCGCGGCTGTACCATTTGCTTGCCAGGCGCGGCGGCAGGCTGGCCAGGGTCTGGGCAATTTCCATGGGGGTCTGGCCCTGATTGATCAGGCGCAAGGTCTGGCTGTCGATGAAGGCATACATATCGCGCTGGTCGGCCAGGTAGTCGCGGATGGCCGCACCAC > NC_002947/2325956‑2326252 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |