Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,402,311 A→T 7.5% L19Q (CTG→CAG)  PP_2103 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,402,3110AT 7.5% 157.3 / 3.0 53L19Q (CTG→CAG) PP_2103hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (22/27);  new base T (2/2);  total (24/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.21e-01

CCGATGCCCCACAGTGGCGCATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGCGATGATTCGTCGAACACCGCCGCCTTCAGGCGCACGCCG  >  NC_002947/2402167‑2402459
                                                                                                                                                 |                                                                                                                                                    
ccGATGCCCCACAGTGGCGCATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAgcgc                                                                                                                                                  >  6:247631/1‑149 (MQ=255)
        ccACAGTGGCGCATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTgcg                                                                                                                                            >  5:235929/1‑147 (MQ=255)
        ccACAGTGGCGCATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCa                                                                                                                                          <  2:264148/149‑1 (MQ=255)
         cacaGTGGCGCATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAAGGCGCTGCTGCGCCTGCGCat                                                                                                                                         <  4:105465/149‑2 (MQ=255)
         cacaGTGGCGCATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAAGGCGCTGCTGCGCCTGCGCat                                                                                                                                         <  3:20051/149‑2 (MQ=255)
              tGGCGCATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTcgc                                                                                                                                    <  7:277615/149‑1 (MQ=255)
                 cgcATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTcgcgcg                                                                                                                                 <  7:217718/149‑1 (MQ=255)
                  gcATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCgg                                                                                                                                <  5:289578/149‑1 (MQ=255)
                  gcATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCgg                                                                                                                                <  6:319229/149‑1 (MQ=255)
                    aTGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGt                                                                                                                              <  5:216026/149‑1 (MQ=255)
                     tGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGtt                                                                                                                             <  7:33807/149‑1 (MQ=255)
                       cTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTa                                                                                                                            <  5:247631/148‑1 (MQ=255)
                        ttGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTAcg                                                                                                                          >  1:166043/1‑149 (MQ=255)
                          gATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTAcgc                                                                                                                         <  4:83909/148‑1 (MQ=255)
                               ccAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGttt                                                                                                                   <  1:7587/149‑1 (MQ=255)
                                                 aGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCt                                                                                                  >  2:236731/1‑148 (MQ=255)
                                                 aGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCt                                                                                                  >  3:111513/1‑148 (MQ=255)
                                                 aGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCt                                                                                                  >  4:175489/1‑148 (MQ=255)
                                                   cTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCAt                                                                                               <  2:166043/149‑1 (MQ=255)
                                                      cccATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATgg                                                                                             >  8:104530/1‑148 (MQ=255)
                                                        cATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGTaa                                                                                          <  1:92380/149‑1 (MQ=255)
                                                        cATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCaa                                                                                          >  3:201536/1‑149 (MQ=255)
                                                            ccGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTAcg                                                                                                                          >  2:226599/1‑113 (MQ=255)
                                                            ccGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTAcg                                                                                                                          <  1:226599/113‑1 (MQ=255)
                                                            ccGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAg                                                                                       <  6:195401/148‑1 (MQ=255)
                                                             cgcgCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAgg                                                                                      >  4:287058/1‑148 (MQ=255)
                                                             cgcgCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAgg                                                                                      <  3:287058/148‑1 (MQ=255)
                                                             cgcgCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGgc                                                                                     <  6:235929/149‑1 (MQ=255)
                                                                    gcggcgCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCt                                                                              >  2:214326/1‑149 (MQ=255)
                                                                     cggcgCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTg                                                                             <  1:99789/149‑1 (MQ=255)
                                                                      ggcgCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGt                                                                            >  8:106089/1‑149 (MQ=255)
                                                                        cgcAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGAAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTcc                                                                          >  5:32708/1‑149 (MQ=255)
                                                                          cAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCtt                                                                        <  7:104530/149‑1 (MQ=255)
                                                                           aGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTg                                                                       <  5:196105/149‑1 (MQ=255)
                                                                                 tCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGt                                                                 >  3:242380/1‑149 (MQ=255)
                                                                                   aaGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTgg                                                                                                        <  5:35364/108‑1 (MQ=255)
                                                                                   aaGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTgg                                                                                                        >  6:35364/1‑108 (MQ=255)
                                                                                    aGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCTGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTtcg                                                              <  1:75641/149‑1 (MQ=255)
                                                                                      cAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTtcgtc                                                            <  2:84063/149‑1 (MQ=255)
                                                                                               ggACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTAGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGgc                                                   >  1:88478/1‑149 (MQ=255)
                                                                                                   tCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGcc                                                >  5:314827/1‑148 (MQ=255)
                                                                                                       gACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAgg                                           >  2:630/1‑149 (MQ=255)
                                                                                                        aCGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAggg                                          >  1:285259/1‑149 (MQ=255)
                                                                                                        aCGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAgg                                           <  6:32708/148‑1 (MQ=255)
                                                                                                        aCGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAAGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAg                                            <  2:214802/147‑1 (MQ=255)
                                                                                                        aCGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAAGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAg                                            >  1:214802/1‑147 (MQ=255)
                                                                                                          ggATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGc                                         >  8:116202/1‑148 (MQ=255)
                                                                                                                 cTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGGTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGCGATGATtc                                 <  3:175489/149‑1 (MQ=255)
                                                                                                                    gCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGCGATGATtcgt                               <  4:111513/148‑1 (MQ=255)
                                                                                                                        tGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATg                                                                                              >  8:18154/1‑81 (MQ=255)
                                                                                                                        tGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATg                                                                                              <  7:18154/81‑1 (MQ=255)
                                                                                                                                  tGCGCAAGGCGCTGCTGCGCCTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGCGATGATTCGTCGAACACCGCCGCCt                >  1:172781/1‑149 (MQ=255)
                                                                                                                                     gcaaggcgctgCTGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGCGATGATTCGTCGAACACCGCCGCCtt               >  7:223015/4‑148 (MQ=255)
                                                                                                                                               gcagcGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGCGATGATTCGTCGAACACCGCCGCCTTCAGGCGCAcgc    <  7:106089/149‑1 (MQ=255)
                                                                                                                                                cagcGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGCGATGATTCGTCGAACACCGCCGCCTTCAGGCGCAcgcc   <  6:314827/149‑1 (MQ=255)
                                                                                                                                                 agcGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGCGATGATTCGTCGAACACCGCCGCCTTCAGGCGCAcgccg  <  1:630/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
CCGATGCCCCACAGTGGCGCATGCTTGATACCCAGGCCTTCATGTAGCGAGCTGCCCATACCGCGCACGCGGCGCAGCGGTTCAAGCAACTGACCGGACTCATGACGGATTTCCTGGCGGTGCATTTCCATGCGCAGGCGCAGCAGCGCCTTGCGCAGTTCGCGCGGGTTACGCGTGTTTGGCAGTTCTGGCAGGCTCATGGCAACAGGCGCTCCCTGTCCTTGGCAAGTTCGTCGAGGGTGGCGCCGAAGGGCGATGATTCGTCGAACACCGCCGCCTTCAGGCGCACGCCG  >  NC_002947/2402167‑2402459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: