Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,453,602 | T→A | 12.5% | Q506L (CAG→CTG) | mfd ← | transcription‑repair coupling factor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,453,602 | 0 | T | A | 12.5% | 100.3 / 6.6 | 40 | Q506L (CAG→CTG) | mfd | transcription‑repair coupling factor |
Reads supporting (aligned to +/- strand): ref base T (21/14); new base A (3/2); total (24/16) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
TTTCTGCCAGGCCTCCGAACCCAGCCGGTGCAGCGGTGCCAGGGCGTCGTCGCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCGCGCTTGTCACGGCGCCGGCG > NC_002947/2453457‑2453747 | tttCTGCCAGGCCTCCGAACCCAGCCGGTGCAGCGGTGCCAGGGCGTCGTCGCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGACGGCCAGGc > 6:315059/1‑149 (MQ=255) gCCAGGCCTCCGAACCCAGCCGGTGCAGCGGTGCCAGGGCGTCGTCGCTGCCGGTGTAGCGGGCGATCAGGTGCACGTTGGCCACCCGCACATACAGCTTGGCGTTCTAGGCGTAAACGAGCGTCAGGAATTCGGCGGCCTGGcgggcg > 8:66703/1‑144 (MQ=255) ccAGGCCTCCGAACCCAGCCGGTGCAGCGGTGCCAGGGCGTCGTCGCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGCCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGa > 8:292666/1‑149 (MQ=255) cAGGCCTCCGAACCCAGCCGGTGCAGCGGTGCCAGGGCGTCGTCGCTGCCGGTGGAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGAt < 5:76152/149‑1 (MQ=255) gCCTCCGAACCCAGCCGGTGCAGCGGTGCCAGGGCGTCGTCGCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGACGGCCAGGCCGCCGAATTc < 5:315059/149‑1 (MQ=255) cccAGCCGGTGCAGCGGTGCCAGGGCGTCGTCGCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTcc > 5:298153/1‑141 (MQ=255) cccAGCCGGTGCAGCGGTGCCAGGGCGTCGTCGCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTcc < 6:298153/141‑1 (MQ=255) tGCCAGGGCGTCGTCGCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGc < 8:211299/149‑1 (MQ=255) gtcgCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGt > 1:140597/1‑149 (MQ=255) tcgCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTc < 1:254469/149‑1 (MQ=255) ccGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGAtgtg > 4:76319/1‑149 (MQ=255) ccGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGAtgtg > 4:83254/1‑149 (MQ=255) gCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTCGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCg > 1:17581/1‑149 (MQ=255) gggCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGgc > 1:129916/1‑149 (MQ=255) ggCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATTGTCGATGTGCACCACCGgcg < 7:292666/149‑1 (MQ=255) gTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTcgc < 3:83254/149‑1 (MQ=255) ggCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCgg > 3:218498/1‑149 (MQ=255) ccACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTcg < 1:55555/137‑1 (MQ=255) ccACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTcg > 2:55555/1‑137 (MQ=255) ccACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGt > 1:157632/1‑148 (MQ=255) cACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGc < 6:197207/118‑1 (MQ=255) cACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGc > 5:197207/1‑118 (MQ=255) aCCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAg < 2:140597/149‑1 (MQ=255) cAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTtgatga > 8:191270/1‑149 (MQ=255) tcGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGc > 5:140475/1‑149 (MQ=255) cGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCg > 3:72056/1‑149 (MQ=255) ccAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTcgccg > 1:144874/1‑149 (MQ=255) aGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCCTCGTTGGCGGTTTCGCcgcg < 2:17581/149‑1 (MQ=255) gCGTCAGGAATTCGGCGGCCTGGCCGTGGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGGAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCgcgc < 2:144245/149‑1 (MQ=255) tCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCGCGCTTg > 8:283331/1‑149 (MQ=255) tggAAATCGACGGCCAGGCCGCCGAATTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGttt > 5:225218/2‑136 (MQ=255) tggAAATCGACGGCCAGGCCGCCGAATTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGttt < 6:225218/135‑1 (MQ=255) tggAAATCGACGGCCAGGCCGCCGAATTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCGCGCTTGt > 3:89938/2‑148 (MQ=255) gAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCAGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCGCGCTTGTCAc > 2:62011/1‑149 (MQ=255) ggcggcCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCGCGCTTGTCAcggcgcc > 8:83082/1‑149 (MQ=255) gcggcCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCg > 6:96723/1‑93 (MQ=255) gcggcCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCg < 5:96723/93‑1 (MQ=255) gcCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCGCGCtt > 6:316929/1‑134 (MQ=255) gcCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCGCGCtt < 5:316929/134‑1 (MQ=255) gcCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCGCGCTTGTCAcggcgccggcg < 4:218498/149‑1 (MQ=255) | TTTCTGCCAGGCCTCCGAACCCAGCCGGTGCAGCGGTGCCAGGGCGTCGTCGCTGCCGGTGTAGCGGGCGATCAGGTGCAGGTTGGCCACCGGCACATACAGCTTGGCGTTCTCGGCGTATTCCAGCGTCAGGAATTCGGCGGCCTGGCCGTCGATTTCCAGCGTGGCCAGGCCCAGGTAGCGGCCGACGCCATGGTCGATGTGCACCACCGGCGCACCTTCGCGCAGCTCGGTGAGGTTCTTGATGACCGCGTCGTTGGCGGTTTCGCCGCGCTTGTCACGGCGCCGGCG > NC_002947/2453457‑2453747 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |