Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,578,987 | C→A | 8.7% | L133I (CTC→ATC) ‡ | PP_2260 → | glycerol‑phosphate ABC transporter ATP‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,578,987 | 0 | C | A | 8.7% | 139.8 / 4.1 | 46 | L133I (CTC→ATC) ‡ | PP_2260 | glycerol‑phosphate ABC transporter ATP‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (18/23); new base A (2/2); total (20/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.09e-01 |
AATTACCCGACCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAGCTGCGCGAGCTGTTCGCGGCGCG > NC_002947/2578843‑2579135 | aaTTACCCGACCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCtctc < 1:48916/149‑1 (MQ=255) aaTTACCCGACCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCtctc > 3:38736/1‑149 (MQ=255) ttACCCGACCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGTCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCtctcag > 2:119145/1‑147 (MQ=255) cccGACCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGt < 1:243007/148‑1 (MQ=255) cccGACCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACCGGAGAGCTCCAGt < 8:99453/148‑1 (MQ=255) ccGACCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTgg > 6:325452/1‑149 (MQ=255) cGACCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGc > 6:275399/1‑149 (MQ=255) aCCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCAGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCca < 6:129888/149‑1 (MQ=255) gAGCGTGTTCGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCcagca < 1:12084/147‑1 (MQ=255) aGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCagcagc < 4:38736/148‑1 (MQ=255) tACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCAc > 1:100282/1‑149 (MQ=255) aaaCATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGa > 2:99319/1‑149 (MQ=255) aaCATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGCTGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGAt < 5:50546/149‑1 (MQ=255) cgcctcgccGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCCGCAACGCACGGCGATGGc > 7:293207/1‑147 (MQ=255) gcctcgccGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCa < 5:58423/148‑1 (MQ=255) cctcgccGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAgg < 5:112343/149‑1 (MQ=255) ctcgccGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCTGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAggg < 8:293207/149‑1 (MQ=255) ctcgccGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAggg > 3:317294/1‑149 (MQ=255) ctcgccGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAggg < 3:52327/149‑1 (MQ=255) gccgcTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCa < 2:100282/148‑1 (MQ=255) ccgcTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACt < 6:147376/149‑1 (MQ=255) cgcCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCaa < 3:103533/149‑1 (MQ=255) ccAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAgg < 2:94393/149‑1 (MQ=255) cAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGa < 5:275399/149‑1 (MQ=255) cATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCGGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGt < 8:220330/149‑1 (MQ=255) cATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGt < 1:99319/149‑1 (MQ=255) cAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTcgc > 4:241799/1‑148 (MQ=255) cAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTcga > 5:110994/1‑149 (MQ=255) cAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTcga > 2:236292/1‑149 (MQ=255) gATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTcgccg > 7:147031/1‑149 (MQ=255) cggcggcggGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGc > 4:310871/1‑148 (MQ=255) ggcggGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTg < 1:236292/149‑1 (MQ=255) gAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGa < 3:310871/149‑1 (MQ=255) gAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGa < 6:110994/149‑1 (MQ=255) cGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTc > 1:294850/1‑139 (MQ=255) cGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTc < 2:294850/139‑1 (MQ=255) tCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGAc > 7:184620/1‑128 (MQ=255) tCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGAc < 8:184620/128‑1 (MQ=255) tGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAGCTg > 5:178776/1‑149 (MQ=255) tggCCACCGGAGAGCTCCAGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAGCTGcgcg < 6:109934/143‑1 (MQ=255) tggCCACCGGAGAGCTCCAGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAGCTGcgcg > 5:109934/3‑145 (MQ=255) tggCCACCGGAGAGCTCCAGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAGCTGCGCGAGCt > 3:50538/3‑149 (MQ=255) cTGCCACTGGAGGTGTCCGGTGGCCAGCAGCATCGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAGCTGCGCGAGCt < 8:61979/149‑1 (MQ=255) cACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAg < 6:127587/134‑1 (MQ=255) cACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAg > 5:127587/1‑134 (MQ=255) gAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAGCTGCGCGAGCTGTTCgcggc > 3:130113/1‑149 (MQ=255) ctctCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAGCTGCGCGAGCTGTTCGCGgcgcg > 5:183346/1‑149 (MQ=255) ctctCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGAAGAGCCATTGGTCAACCTCGACTACAAGTTCCGCGAAGGCCTGCGCCAGGAGCTGCGCGAGCTGTtcgcgtcgcg > 7:241271/1‑149 (MQ=255) | AATTACCCGACCTTGAGCGTGTACGAAAACATCGCCTCGCCGCTGCGCCAGGCGCGCATGGCCGAGGACCAGATCCGGCGGCGGGTGCAGGAAACTGCCGAGATGCTGCGCATCGAAACCTACCTGCAACGCCTGCCACTGGAGCTCTCCGGTGGCCAGCAGCAACGCACGGCGATGGCCAGGGCACTGGTCAAGGATGCCTCGTTGATCCTCTTCGACGAGCCATTGGTCAACCTCGACTACAAGTTGCGCGAAGGCCTGCGCCAGGAGCTGCGCGAGCTGTTCGCGGCGCG > NC_002947/2578843‑2579135 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |