Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,631,145 | C→G | 9.3% | Q204E (CAG→GAG) | lon‑II → | DNA‑binding ATP‑dependent protease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,631,145 | 0 | C | G | 9.3% | 157.2 / 7.6 | 54 | Q204E (CAG→GAG) | lon‑II | DNA‑binding ATP‑dependent protease |
Reads supporting (aligned to +/- strand): ref base C (22/27); new base G (2/3); total (24/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.75e-01 |
GACGAGCCAGGGCGCCTGGTCGACACCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATGGTGACGAAGGCCACAATGAAGTCGAAGAGCTGAA > NC_002947/2631001‑2631287 | gacgaGCCAGGGCGCCTGGTCGACACCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGt < 1:136086/149‑1 (MQ=255) acgaGCCAGGGCGCCTGGTCGACACCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTc < 3:162564/149‑1 (MQ=255) cgaGCCAGGGCGCCTGGTCGACACCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCg < 8:218/149‑1 (MQ=255) gCCAGGGCGCCTGGTCGACACCACGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTGCAGGAGGTCGatt < 7:109575/149‑3 (MQ=255) aGGGCGCCTGGTCGACACCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAgc > 2:123831/1‑149 (MQ=255) aGGGCGCCTGGTCGACACCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAAACGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTGCAGGAGGTCGatttcg < 1:102798/149‑6 (MQ=255) gcgcCTGGTCGACACCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCa > 3:254678/1‑149 (MQ=255) acacCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCgg < 5:61351/149‑1 (MQ=255) acacCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCgg < 2:109973/149‑1 (MQ=255) cATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCTCATTCTCGGCCGGGTc > 6:240139/1‑148 (MQ=255) cATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTc > 1:236432/1‑148 (MQ=255) cATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTc > 5:55564/1‑148 (MQ=255) cgcgCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGt < 1:60225/141‑1 (MQ=255) cgcgCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGt > 2:60225/1‑141 (MQ=255) gcgcACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCGGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCa < 6:213548/149‑1 (MQ=255) cacaTGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGAt < 4:218435/149‑1 (MQ=255) caTGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATgg < 2:236432/149‑1 (MQ=255) aTGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATg > 8:144596/1‑147 (MQ=255) cccTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAgcgc < 7:195220/149‑1 (MQ=255) ccTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCCGCCgg < 6:322238/127‑1 (MQ=255) ccTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCCCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCCGCCgg > 5:322238/1‑127 (MQ=255) gATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGcagccagc < 8:256/149‑1 (MQ=255) cGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAgcg > 6:274831/1‑147 (MQ=255) cGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAgcg < 5:274831/147‑1 (MQ=255) cAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCgg < 6:69264/114‑1 (MQ=255) cAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCgg > 5:69264/1‑114 (MQ=255) cAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGta > 6:263375/1‑149 (MQ=255) cAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACCTGCTCGCGCTGCAGCATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATCGAGCGCAGCCAGAGCGAGt > 7:140916/1‑148 (MQ=255) aGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCt > 4:22122/1‑148 (MQ=255) gAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAgcgc > 5:34142/1‑135 (MQ=255) gAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAgcgc < 6:34142/135‑1 (MQ=255) aaaTTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAAt < 1:123831/149‑1 (MQ=255) ttCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAg < 6:26756/149‑1 (MQ=255) tCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAg > 1:207383/1‑148 (MQ=255) tGAAATCGTCGACTTGACTACCCTTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCTAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAg < 7:196856/148‑1 (MQ=255) gtcgACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAgg < 7:144596/148‑1 (MQ=255) cccGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCagaaagaa > 1:227128/1‑149 (MQ=255) ccGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAAt > 8:241442/1‑121 (MQ=255) ccGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAAt < 7:241442/121‑1 (MQ=255) ccGTGTCGAGCACGTGCTGGCGATGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCTGGTCAAGAAGCAGATGGAGCGCAGCCAGCGAGAGTACTACCTGAATGAGCAGATGAAGGCCAtt < 8:207940/139‑1 (MQ=255) cagtgtCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTACTGCAGGTCGAAAAGCGCATTCGCGGCCTGGGAAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCAtt > 7:207940/3‑139 (MQ=255) tgtCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTg < 3:22122/149‑1 (MQ=255) gCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATg < 4:254678/149‑1 (MQ=255) cACGTGCTGGCGCTTCTGGATGCCTTAATCGACCTCCTGCAGGTCGAAAAGCGCATTCTCGGCCTGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATgg < 8:140916/149‑1 (MQ=255) cACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATgg < 5:263375/149‑1 (MQ=255) gTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATGGTGa < 4:249746/149‑1 (MQ=255) aTGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATGGTGACGAAGGCCACAATGaa < 2:227128/149‑1 (MQ=255) gcttttCGACCTGCAGGAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTgg < 3:84941/115‑1 (MQ=255) gcttttCGACCTGCAGGAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTgg > 4:84941/6‑120 (MQ=255) cGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATGGTGACGAAGGCCACAATGAAGTc > 8:269544/1‑148 (MQ=255) ttttCGACCTGCAGGAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATGGTGACGAAGGCCACAATGAAGTCg > 2:207863/4‑147 (MQ=255) cGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTAACTGAATGAGCAGATCAAGGCCATTCAGAAAGAACTTGGCGATGGTGACGAAGGCCACAAAGAAGTCGAagag > 2:291859/1‑148 (MQ=255) ctcctGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATGGTGACGAAGGCCACAATGAAGTCGAAGAGCTGa > 3:162143/1‑148 (MQ=255) tcctGCAGGTCGAAAAGCGCATTCGCCGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATGGTGACGAAGGCCACAATGAAGTCGAAGAGCTGaa > 6:158746/1‑148 (MQ=255) | GACGAGCCAGGGCGCCTGGTCGACACCATGGCCGCGCACATGGCCCTGAAGATCGAGCAGAAGCAGGAAATTCTTGAAATCGTCGACTTGACTACCCGTGTCGAGCACGTGCTGGCGCTGCTGGATGCCGAAATCGACCTCCTGCAGGTCGAAAAGCGCATTCGCGGCCGGGTCAAGAAGCAGATGGAGCGCAGCCAGCGCGAGTACTACCTGAATGAGCAGATGAAGGCCATTCAGAAAGAACTTGGCGATGGTGACGAAGGCCACAATGAAGTCGAAGAGCTGAA > NC_002947/2631001‑2631287 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |