Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,707,047 G→T 8.9% intergenic (+16/+31) PP_2369 → / ← PP_2370 leucine‑rich repeat‑containing protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,707,0470GT 8.9% 187.4 / 4.8 63intergenic (+16/+31)PP_2369/PP_2370leucine‑rich repeat‑containing protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (36/21);  new base T (2/4);  total (38/25)
Fisher's exact test for biased strand distribution p-value = 2.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01

GAACAATCGAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCG  >  NC_002947/2706900‑2707195
                                                                                                                                                   |                                                                                                                                                    
gAACAATCGAAAACGCTCAGAGATGGCCACTATTTTGCCCACCTCGAGCATATCAGCGCAGCGCGTGAGGTCGCTAAACGGCAGATGTTGCTTGAGTTGAGCCGTGAGGAAAACCCACGCCACCTCCAGTGACCGCAACAGCcagccgc                                                                                                                                                     >  6:227113/1‑148 (MQ=255)
 aaCAATCGAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCgag                                                                                                                                                    <  5:75105/149‑1 (MQ=255)
     aTCGAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCAGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGc                                                                                                                                                <  5:100749/149‑1 (MQ=255)
        gAAAACTCTCAGTGATTGCGACTATTTTGCACAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTTCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCggg                                                                                                                                             <  2:273883/149‑1 (MQ=255)
        gAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCggg                                                                                                                                             >  5:21084/1‑149 (MQ=255)
             cGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCCTATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGtt                                                                                                                                        <  5:310321/149‑1 (MQ=255)
             cGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGACGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGtt                                                                                                                                        <  2:67452/149‑1 (MQ=255)
              gCTGAGTGATGGCGACTATTTTGCACAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGAGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGAGGGCTGTTc                                                                                                                                       >  7:282764/1‑149 (MQ=255)
                  aGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCTCTCGGCGGGCTGtttcgtt                                                                                                                                   <  1:155785/149‑6 (MQ=255)
                     gATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTgggg                                                                                                                                >  6:137116/1‑149 (MQ=255)
                      aTGGCTACTATTTTGCCCAGGTCGCGCATATCTGCGCAGCGCGTGAGGTCGCTAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTgggg                                                                                                                                <  8:271258/148‑1 (MQ=255)
                        ggCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCgg                                                                                                                             >  4:51139/1‑149 (MQ=255)
                         gCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCgg                                                                                                                             <  6:21084/148‑1 (MQ=255)
                           gACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCTCTCGGCGGGCTGtttcgtt                                                                                                                                   >  7:113180/1‑135 (MQ=255)
                           gACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCTCTCGGCGGGCTGtttcgtt                                                                                                                                   <  8:113180/140‑6 (MQ=255)
                           gACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCATGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTCGGGCGGGAc                                                                                                                          >  5:150161/1‑149 (MQ=255)
                            aCTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGAc                                                                                                                          >  5:315164/1‑148 (MQ=255)
                            aCTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGAc                                                                                                                          >  1:130163/1‑148 (MQ=255)
                                ttttGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGAt                                                                                                                       >  1:321484/1‑147 (MQ=255)
                                      ccAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAgcggcg                                                                                                               >  6:171077/1‑149 (MQ=255)
                                      ccAGGTCGAGCATATCTGCGCAGCACGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAgcggcg                                                                                                               >  7:46576/1‑149 (MQ=255)
                                             gAGCTTATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGaa                                                                                                         <  3:236509/148‑1 (MQ=255)
                                             gAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGaa                                                                                                         >  8:278394/1‑148 (MQ=255)
                                               gCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTTAACGAAACAGCCCGCCTATAGGCGGGCTGTTCGCTGGGGCGGGACTATCAGCGGCGGCGGAAcag                                                                                                      <  5:137116/149‑1 (MQ=255)
                                               gCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGCTCAGCGGCGGCGGAAcag                                                                                                      >  4:125302/1‑149 (MQ=255)
                                                aatatCGGCGCAGGGCGTGAGGTCGCTAAACGGCAGCTTTTGCTTTAGTGGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTTAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAAcagc                                                                                                     <  2:321484/148‑1 (MQ=255)
                                                  tatCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAAcagcgg                                                                                                   >  7:278757/1‑149 (MQ=255)
                                                    tCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAAcagcgg                                                                                                   >  2:14548/1‑147 (MQ=255)
                                                         gcAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGAGGATCAGCGGCGGCGGAACAGCGGCAGCGGt                                                                                            >  7:109736/1‑149 (MQ=255)
                                                            gcgcGTGAGGTCGCCAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGAGGGACGATCAGCTGCGGCGGAACAGCGGCAGCGGTtcg                                                                                         >  7:238537/1‑149 (MQ=255)
                                                             cgcgTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTtcgt                                                                                        >  8:175845/1‑149 (MQ=255)
                                                                     gTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTggcg                                                                                <  8:278757/149‑1 (MQ=255)
                                                                        gcgAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGcc                                                                             <  7:175845/149‑1 (MQ=255)
                                                                          gAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTg                                                                           >  1:301644/1‑149 (MQ=255)
                                                                            aaCGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGt                                                                         <  5:171077/149‑1 (MQ=255)
                                                                                gaaGCTTTTGCTTGAGTTGAGCCGTGAGGCTATCCAGCGCCAGGGCCTGTGAACTAAACAGGCCGCCGTGAGGCGGGCTGTTCGCTGGGGCGGGACGATCATCGGCGGCTGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGt                                                                     <  8:282764/147‑1 (MQ=255)
                                                                                gCAGATTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGt                                                                     >  8:271251/1‑149 (MQ=255)
                                                                                   gCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCAc                                                                  >  4:211311/1‑149 (MQ=255)
                                                                                   gCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCAc                                                                  <  8:88470/149‑1 (MQ=255)
                                                                                   gCTTTTGCTTGAGTTGAGCAGTGAGGCAATCCAACGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCAc                                                                  >  4:273529/1‑149 (MQ=255)
                                                                                          cTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGaa                                                            <  5:196407/148‑1 (MQ=255)
                                                                                          cTTGAGTTGAGCCGTGAGGCAATCCAACGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGaa                                                            <  3:273529/148‑1 (MQ=255)
                                                                                                     ccGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCt                                                >  8:94740/1‑149 (MQ=255)
                                                                                                      cGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAAc                                                                                                        >  3:155984/1‑92 (MQ=255)
                                                                                                      cGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCtt                                               >  5:229761/1‑149 (MQ=255)
                                                                                                        tGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTg                                             >  2:215965/1‑149 (MQ=255)
                                                                                                        tGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTg                                             <  3:51139/149‑1 (MQ=255)
                                                                                                            gCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAgc                                         >  4:150296/1‑149 (MQ=255)
                                                                                                                 ccAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTc                                    >  1:176285/1‑149 (MQ=255)
                                                                                                                   aGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCtt                                  >  3:18325/1‑149 (MQ=255)
                                                                                                                       cgagggCCTGTGAACGAAACAGCCCGCCGAGCGGCGGGCTGTTCGCTGGGTCTGGACGATCAGCGGCGGCTGAACAGCGTCAGCGGTTCGTCGTTGGCGGCCTGGTAGGTCACGGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCgt                              <  5:227113/145‑2 (MQ=255)
                                                                                                                       ccACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCgg                              <  6:241692/149‑1 (MQ=255)
                                                                                                                       ccACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCgg                              >  5:241692/1‑149 (MQ=255)
                                                                                                                        cACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCggg                             >  3:109882/1‑149 (MQ=255)
                                                                                                                                 tgAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTGCTTCATGCTTTGCAGCGCGTCTTCCGGGTCCTTGt                      <  8:46576/147‑1 (MQ=255)
                                                                                                                                 tgAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTc                     <  1:215965/148‑1 (MQ=255)
                                                                                                                                   aaCGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCgg                   >  3:272747/1‑148 (MQ=255)
                                                                                                                                   aaCGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCgg                   >  1:77853/1‑148 (MQ=255)
                                                                                                                                   aaCGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCgg                   <  2:301644/148‑1 (MQ=255)
                                                                                                                                    aCGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGCCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCa                 >  2:209472/1‑149 (MQ=255)
                                                                                                                                        aaCAGCCCGCCTCTCGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCAc                <  4:134675/146‑1 (MQ=255)
                                                                                                                                        aaCAGCCCGCCTCTCGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCAc                >  3:134675/1‑146 (MQ=255)
                                                                                                                                        aaCAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGa             >  3:40584/1‑149 (MQ=255)
                                                                                                                                        aaCAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGACCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGa             >  5:14006/1‑149 (MQ=255)
                                                                                                                                             cccGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGT‑GCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCg        >  6:190259/1‑148 (MQ=255)
                                                                                                                                              ccgccgAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCg        >  6:258545/1‑148 (MQ=255)
                                                                                                                                                gccgAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAAt     >  8:154046/1‑149 (MQ=255)
                                                                                                                                                gccgAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAAt     <  2:176285/149‑1 (MQ=255)
                                                                                                                                                gccgAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAAt     <  1:14548/149‑1 (MQ=255)
                                                                                                                                                   gagaGGCGGGGTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCg  <  6:150161/149‑1 (MQ=255)
                                                                                                                                                   gagaGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGACCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCg  <  6:14006/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GAACAATCGAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCG  >  NC_002947/2706900‑2707195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑