Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,707,048 A→C 7.4% intergenic (+17/+30) PP_2369 → / ← PP_2370 leucine‑rich repeat‑containing protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,707,0480AC 7.4% 195.1 / 5.2 67intergenic (+17/+30)PP_2369/PP_2370leucine‑rich repeat‑containing protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (38/23);  new base C (2/3);  total (40/27)
Fisher's exact test for biased strand distribution p-value = 3.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01

AACAATCGAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCG  >  NC_002947/2706901‑2707195
                                                                                                                                                   |                                                                                                                                                   
aaCAATCGAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCgag                                                                                                                                                    <  5:75105/149‑1 (MQ=255)
    aTCGAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCAGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGc                                                                                                                                                <  5:100749/149‑1 (MQ=255)
       gAAAACTCTCAGTGATTGCGACTATTTTGCACAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTTCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCggg                                                                                                                                             <  2:273883/149‑1 (MQ=255)
       gAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCggg                                                                                                                                             >  5:21084/1‑149 (MQ=255)
            cGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCCTATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGtt                                                                                                                                        <  5:310321/149‑1 (MQ=255)
            cGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGACGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGtt                                                                                                                                        <  2:67452/149‑1 (MQ=255)
             gCTGAGTGATGGCGACTATTTTGCACAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGAGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGAGGGCTGTTc                                                                                                                                       >  7:282764/1‑149 (MQ=255)
                 aGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCTCTCGGCGGGCTGtttcgtt                                                                                                                                   <  1:155785/149‑6 (MQ=255)
                    gATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTgggg                                                                                                                                >  6:137116/1‑149 (MQ=255)
                     aTGGCTACTATTTTGCCCAGGTCGCGCATATCTGCGCAGCGCGTGAGGTCGCTAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTgggg                                                                                                                                <  8:271258/148‑1 (MQ=255)
                       ggCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCgg                                                                                                                             >  4:51139/1‑149 (MQ=255)
                        gCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCgg                                                                                                                             <  6:21084/148‑1 (MQ=255)
                          gACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCTCTCGGCGGGCTGtttcgtt                                                                                                                                   >  7:113180/1‑135 (MQ=255)
                          gACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCTCTCGGCGGGCTGtttcgtt                                                                                                                                   <  8:113180/140‑6 (MQ=255)
                          gACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCATGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTCGGGCGGGAc                                                                                                                          >  5:150161/1‑149 (MQ=255)
                           aCTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGAc                                                                                                                          >  5:315164/1‑148 (MQ=255)
                           aCTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGAc                                                                                                                          >  1:130163/1‑148 (MQ=255)
                               ttttGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGAt                                                                                                                       >  1:321484/1‑147 (MQ=255)
                                     ccAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAgcggcg                                                                                                               >  6:171077/1‑149 (MQ=255)
                                     ccAGGTCGAGCATATCTGCGCAGCACGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAgcggcg                                                                                                               >  7:46576/1‑149 (MQ=255)
                                            gAGCTTATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGaa                                                                                                         <  3:236509/148‑1 (MQ=255)
                                            gAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGaa                                                                                                         >  8:278394/1‑148 (MQ=255)
                                              gCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTTAACGAAACAGCCCGCCTATAGGCGGGCTGTTCGCTGGGGCGGGACTATCAGCGGCGGCGGAAcag                                                                                                      <  5:137116/149‑1 (MQ=255)
                                              gCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGCTCAGCGGCGGCGGAAcag                                                                                                      >  4:125302/1‑149 (MQ=255)
                                               aatatCGGCGCAGGGCGTGAGGTCGCTAAACGGCAGCTTTTGCTTTAGTGGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTTAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAAcagc                                                                                                     <  2:321484/148‑1 (MQ=255)
                                                 tatCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAAcagcgg                                                                                                   >  7:278757/1‑149 (MQ=255)
                                                   tCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAAcagcgg                                                                                                   >  2:14548/1‑147 (MQ=255)
                                                        gcAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGAGGATCAGCGGCGGCGGAACAGCGGCAGCGGt                                                                                            >  7:109736/1‑149 (MQ=255)
                                                           gcgcGTGAGGTCGCCAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGAGGGACGATCAGCTGCGGCGGAACAGCGGCAGCGGTtcg                                                                                         >  7:238537/1‑149 (MQ=255)
                                                            cgcgTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTtcgt                                                                                        >  8:175845/1‑149 (MQ=255)
                                                                    gTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTggcg                                                                                <  8:278757/149‑1 (MQ=255)
                                                                       gcgAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGcc                                                                             <  7:175845/149‑1 (MQ=255)
                                                                         gAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTg                                                                           >  1:301644/1‑149 (MQ=255)
                                                                           aaCGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGt                                                                         <  5:171077/149‑1 (MQ=255)
                                                                               gaaGCTTTTGCTTGAGTTGAGCCGTGAGGCTATCCAGCGCCAGGGCCTGTGAACTAAACAGGCCGCCGTGAGGCGGGCTGTTCGCTGGGGCGGGACGATCATCGGCGGCTGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGt                                                                     <  8:282764/147‑1 (MQ=255)
                                                                               gCAGATTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGt                                                                     >  8:271251/1‑149 (MQ=255)
                                                                                  gCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCAc                                                                  >  4:211311/1‑149 (MQ=255)
                                                                                  gCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCAc                                                                  <  8:88470/149‑1 (MQ=255)
                                                                                  gCTTTTGCTTGAGTTGAGCAGTGAGGCAATCCAACGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCAc                                                                  >  4:273529/1‑149 (MQ=255)
                                                                                         cTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGaa                                                            <  5:196407/148‑1 (MQ=255)
                                                                                         cTTGAGTTGAGCCGTGAGGCAATCCAACGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGaa                                                            <  3:273529/148‑1 (MQ=255)
                                                                                                    ccGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCt                                                >  8:94740/1‑149 (MQ=255)
                                                                                                     cGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAAc                                                                                                        >  3:155984/1‑92 (MQ=255)
                                                                                                     cGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCtt                                               >  5:229761/1‑149 (MQ=255)
                                                                                                       tGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTg                                             >  2:215965/1‑149 (MQ=255)
                                                                                                       tGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTg                                             <  3:51139/149‑1 (MQ=255)
                                                                                                           gCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAgc                                         >  4:150296/1‑149 (MQ=255)
                                                                                                                ccAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTc                                    >  1:176285/1‑149 (MQ=255)
                                                                                                                  aGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCtt                                  >  3:18325/1‑149 (MQ=255)
                                                                                                                      cgagggCCTGTGAACGAAACAGCCCGCCGAGCGGCGGGCTGTTCGCTGGGTCTGGACGATCAGCGGCGGCTGAACAGCGTCAGCGGTTCGTCGTTGGCGGCCTGGTAGGTCACGGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCgt                              <  5:227113/145‑2 (MQ=255)
                                                                                                                      ccACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCgg                              <  6:241692/149‑1 (MQ=255)
                                                                                                                      ccACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCgg                              >  5:241692/1‑149 (MQ=255)
                                                                                                                       cACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCggg                             >  3:109882/1‑149 (MQ=255)
                                                                                                                                tgAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTGCTTCATGCTTTGCAGCGCGTCTTCCGGGTCCTTGt                      <  8:46576/147‑1 (MQ=255)
                                                                                                                                tgAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTc                     <  1:215965/148‑1 (MQ=255)
                                                                                                                                  aaCGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCgg                   >  3:272747/1‑148 (MQ=255)
                                                                                                                                  aaCGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCgg                   >  1:77853/1‑148 (MQ=255)
                                                                                                                                  aaCGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCgg                   <  2:301644/148‑1 (MQ=255)
                                                                                                                                   aCGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGCCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCa                 >  2:209472/1‑149 (MQ=255)
                                                                                                                                       aaCAGCCCGCCTCTCGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCAc                <  4:134675/146‑1 (MQ=255)
                                                                                                                                       aaCAGCCCGCCTCTCGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCAc                >  3:134675/1‑146 (MQ=255)
                                                                                                                                       aaCAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGa             >  3:40584/1‑149 (MQ=255)
                                                                                                                                       aaCAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGACCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGa             >  5:14006/1‑149 (MQ=255)
                                                                                                                                            cccGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGT‑GCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCg        >  6:190259/1‑148 (MQ=255)
                                                                                                                                             ccgccgAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCg        >  6:258545/1‑148 (MQ=255)
                                                                                                                                               gccgAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAAt     >  8:154046/1‑149 (MQ=255)
                                                                                                                                               gccgAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAAt     <  2:176285/149‑1 (MQ=255)
                                                                                                                                               gccgAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAAt     <  1:14548/149‑1 (MQ=255)
                                                                                                                                                  gagaGGCGGGGTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCg  <  6:150161/149‑1 (MQ=255)
                                                                                                                                                  gagaGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGACCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCg  <  6:14006/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AACAATCGAAAACGCTGAGTGATGGCGACTATTTTGCCCAGGTCGAGCATATCTGCGCAGCGCGTGAGGTCGCGAAACGGCAGCTTTTGCTTGAGTTGAGCCGTGAGGCAATCCAGCGCCACGGCCTGTGAACGAAACAGCCCGCCGAGAGGCGGGCTGTTCGCTGGGGCGGGACGATCAGCGGCGGCGGAACAGCGGCAGCGGTTCGTCGGTGGCGGCCTGGTAGGTCACCGAGAAGTCCTTCAGGCTTTGCAGCGCGTCTTCCGGGTCCTTGTCGGCACGGATGGCGAATGCG  >  NC_002947/2706901‑2707195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑