Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,026,917 | C→A | 7.4% | S94S (TCC→TCA) | PP_2642 → | GntR family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,026,917 | 0 | C | A | 7.4% | 160.9 / 3.5 | 54 | S94S (TCC→TCA) | PP_2642 | GntR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (20/30); new base A (2/2); total (22/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 |
GCGGGAGATGGCGCAATTGCTGAACGTCAATCGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGACAACGGCGCCTGTGACCATCGCCTGCTGCCACAGG > NC_002947/3026770‑3027065 | gcgGGAGATGGCGCAATTGCTGAACGTCAATCGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCACTTCCg > 2:156391/1‑149 (MQ=255) gagaTGGCGCAATTGCTGAACGTCAATCGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACAAATGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTg < 3:191707/148‑1 (MQ=255) aTTGCAGAACCTCAATCGCAACACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACACCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCtt < 4:50943/149‑1 (MQ=255) tGAACGTCAATCGCAAGACCGTGATCCTTGCTTATGAGGAACCCGAAACCAAGCGCTGCCTGCAAAGCGAGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGcc > 2:287433/1‑149 (MQ=255) aaCGTCAATCGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCt > 3:180096/1‑149 (MQ=255) tcGTCAATCGTAAGACCGTGATCCTTGCTTATGATGTATCCGAAACCAAGGGATGTCTGGAAAGCGTGCAACTGCGGGGCACCTTCTTCAGGCAGCAGCTGGTGCCTGTCACAGCGGCCGCTTCCGGTGCGGTGC‑GGCCTTTTTCCCTg < 2:78249/148‑1 (MQ=255) cGTCAATCGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTgg > 7:244701/1‑149 (MQ=255) tCAATCGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTgg < 1:284066/147‑1 (MQ=255) tCAATCGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTgg > 2:284066/1‑147 (MQ=255) aTCGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTg > 6:25719/1‑149 (MQ=255) cGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGc > 2:269182/1‑148 (MQ=255) gCAAGACCGTTATCCTTGCGTATGAGGAAGCCTAAACCAAGGGCTGGCTGCAAAGCGTGCAACTCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGTCACAGCTGCCGATTCAGGTGCCGTGC‑GGCCTTTTGCCCAGGCGCTGcaa > 2:139863/1‑147 (MQ=255) gCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCAGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGc > 2:139860/1‑147 (MQ=255) cAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGc > 6:53269/1‑146 (MQ=255) aGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCagag > 3:123859/1‑149 (MQ=255) tCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGcc < 4:180096/149‑1 (MQ=255) gCTTATGAGGAAGCCGAACCCAAGGGCTGGCTTCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCAGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCAGtt < 1:139863/147‑1 (MQ=255) gCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGtt < 4:33643/147‑1 (MQ=255) gCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCAGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGtt < 1:139860/147‑1 (MQ=255) tGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTAc < 5:25719/148‑1 (MQ=255) ggAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTc > 2:42419/1‑148 (MQ=255) aGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAgg < 5:213437/149‑1 (MQ=255) gAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCtt < 2:205917/100‑1 (MQ=255) aaaCCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGcgaac < 1:201776/149‑1 (MQ=255) aaGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGcgaacgaa > 5:165659/1‑147 (MQ=255) gggCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGCGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAgg < 1:261679/149‑1 (MQ=255) gctgCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAg < 6:165659/149‑1 (MQ=255) gctgCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAg < 4:78139/149‑1 (MQ=255) gctgCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCACTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTa < 1:156391/148‑1 (MQ=255) ctgCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAgc > 4:102769/1‑149 (MQ=255) gCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAgg < 2:222272/140‑1 (MQ=255) gCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAgg > 1:222272/1‑140 (MQ=255) cAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAgcgc < 8:244701/148‑1 (MQ=255) cAAAGCGTGCAACGCCGGGGCACCTTCGGCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCgca < 8:235686/149‑1 (MQ=255) gCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCaa < 3:152188/149‑1 (MQ=255) gTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAgg < 1:143918/149‑1 (MQ=255) aCGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTCGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGggcggc > 7:63193/1‑149 (MQ=255) cGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGcc > 7:17245/1‑149 (MQ=255) aCCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GTCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAAAGAACGGGCTGTAGCGCAGCAAGGGCGGCCGGGGTCCtt > 6:307077/1‑149 (MQ=255) aCCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCtt < 8:63193/149‑1 (MQ=255) ccTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCCCACTGGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCtt < 1:269182/149‑1 (MQ=255) cTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGt > 3:139359/1‑149 (MQ=255) gTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGATCCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGGGGCCGGGGGCCTTGttctt < 1:287433/149‑1 (MQ=255) tCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGTGGc < 6:328199/139‑1 (MQ=255) tCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGc > 5:328199/1‑139 (MQ=255) tCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGttcttc < 3:270120/149‑1 (MQ=255) tCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGttcttc < 1:42419/149‑1 (MQ=255) agccagcAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGa < 4:123859/149‑1 (MQ=255) ccagcAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGAc > 7:94347/1‑148 (MQ=255) ccagcAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGAGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGAc > 5:295785/1‑148 (MQ=255) cagcTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGACAACgg < 8:251378/149‑1 (MQ=255) cTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGACAACGgcgc < 8:94347/149‑1 (MQ=255) cgcCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGACAACGGCGCCtgt < 5:53269/149‑1 (MQ=255) ccTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGACAACGGCGCCTGTGa < 8:17245/149‑1 (MQ=255) cGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGACAACGGCGCCTGTGACCATCGCCTGCTGCCACAgg < 3:102769/149‑1 (MQ=255) | GCGGGAGATGGCGCAATTGCTGAACGTCAATCGCAAGACCGTGATCCTTGCTTATGAGGAAGCCGAAACCAAGGGCTGGCTGCAAAGCGTGCAACGCCGGGGCACCTTCGTCAGCCAGCAGCTGGCGCCTGGCACAGCGGCCGCTTCCGGTGCCGTGC‑GGCCTTTTGCCCTGGCGCTGCCAGAGGAACCTGCCGTTGCCTACTTCAAGGCGAACGAACAGGCTGTAGCGCAGCAAGGGCGGCCGGGGGCCTTGTTCTTCGACAACGGCGCCTGTGACCATCGCCTGCTGCCACAGG > NC_002947/3026770‑3027065 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |