Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,145,324 | C→A | 7.5% | A244A (GCC→GCA) | PP_2760 → | ribose ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,145,324 | 0 | C | A | 7.5% | 159.5 / 4.1 | 54 | A244A (GCC→GCA) | PP_2760 | ribose ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base C (24/25); new base A (2/2); total (27/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.89e-01 |
GTACACGCCATTCGGCCTGCGTCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGCTGGTCGGGGTGCTGATCAAC > NC_002947/3145177‑3145471 | gTACACGCCATTCGGCCTGCGTCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCt < 6:75223/149‑1 (MQ=255) acGCCATTCGGCCTGCGTCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGtt > 1:158462/1‑149 (MQ=255) gCCATTCGGCCTGCGTCTGTACGCCATCGGNAGAATACCCGGAGGCGGATAATGCCGCTGGCATGTCGGTGCGTGGCTACGTGTTCGCCAGCTACATGATAAGCGGACTGTGCGGCGGCATGGC‑CGCGTTTTGTTCGGCGGCGTGGTTc > 1:29823/1‑149 (MQ=255) ccATTCGGCCTGCGTCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAg < 8:267391/149‑1 (MQ=255) aTTCGGCCTGCGTCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCg > 8:288167/1‑149 (MQ=255) cGGCCTGCGTCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGgc < 4:310824/148‑1 (MQ=255) gCCTGCGTCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGgcagc < 7:288167/149‑1 (MQ=255) cGTCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGcaccac < 5:7233/149‑1 (MQ=255) tCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCg > 4:59598/1‑149 (MQ=255) tCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCg > 3:86289/1‑149 (MQ=255) tACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTACGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTc > 3:30062/1‑149 (MQ=255) cGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCg > 4:87018/1‑149 (MQ=255) gCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTGGGCGGCATGGTTCAGCGGCAGCACCACCGGTTCCgg > 4:169236/1‑149 (MQ=255) aTCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCga < 8:11132/149‑1 (MQ=255) cGG‑AGAATACCCGGAGGCGGCTAATCCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGc > 5:250352/1‑145 (MQ=255) aTACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGAtgctg < 2:158462/148‑1 (MQ=255) ccGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTc > 2:114255/1‑149 (MQ=255) gcTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGc < 5:112944/149‑1 (MQ=255) tGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCgtggtg > 6:10131/1‑142 (MQ=255) tGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCgtggtg < 5:10131/142‑1 (MQ=255) gCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTCGTGGCCATCTCTTTTCtt > 3:232197/1‑149 (MQ=255) ccTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTg < 3:59598/149‑1 (MQ=255) cTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTgg < 7:219012/149‑1 (MQ=255) cTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCATGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTgg > 2:36963/1‑149 (MQ=255) tCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTggg < 7:75867/147‑1 (MQ=255) tCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTggg < 2:223037/147‑1 (MQ=255) tGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGAtc > 8:7935/1‑149 (MQ=255) tGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGAtc > 8:3294/1‑149 (MQ=255) tACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTcc > 3:22413/1‑147 (MQ=255) aCGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAg > 2:193148/1‑149 (MQ=255) cGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGc < 3:87018/149‑1 (MQ=255) gtgtTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCg > 4:116106/1‑149 (MQ=255) gCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGc < 4:30062/148‑1 (MQ=255) ccAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCCCCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAg > 4:185428/1‑149 (MQ=255) cAGCTACCTGATCAGCGGTCAGTGCGGCAGCCTGGCGCGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAg > 1:53091/1‑149 (MQ=255) cTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGa < 4:86289/149‑1 (MQ=255) cTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCATGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGa < 3:169236/149‑1 (MQ=255) cTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCATGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGa < 1:36963/149‑1 (MQ=255) cTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCAt < 6:250352/149‑1 (MQ=255) tGATCAGCGGTATGTGCGCCAGCCTGGC‑CGCGTTTTGTTCGGCGCGCTGGTTCAGACGCACAACCAACGGGTGAGGACAGAAGCGGAATTGCTTTGTGGCCATAGATTTTAATGGGGTGATCTTCTCCCAGCGACTTCCGCCGAACATc > 6:27402/1‑149 (MQ=255) gCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATcggcgg > 4:278585/1‑148 (MQ=255) tCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACgc < 1:193148/149‑1 (MQ=255) tgCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACgctgct < 7:3294/149‑1 (MQ=255) tgCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACgctgct < 7:7935/149‑1 (MQ=255) cGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTgg > 2:216792/1‑149 (MQ=255) ccTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGt < 6:204051/149‑1 (MQ=255) cTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGGAACGtt > 3:292499/1‑149 (MQ=255) ggC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGc > 8:44416/1‑149 (MQ=255) gC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCGAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGc < 3:278585/148‑1 (MQ=255) c‑cGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGCt < 7:44416/148‑1 (MQ=255) ttGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGCTGGTCggg < 2:53091/148‑1 (MQ=255) ttCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGCTGGTCGGGGTGc > 5:174099/1‑149 (MQ=255) ggcggcCTGGTTAAGCGGCAGCACCACCGGTTCCGGCTAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGCTGGTCGGGGTGCTGa > 1:283033/1‑149 (MQ=255) gcggcCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGCTGGTCGGGGTGCTGAt < 1:216792/149‑1 (MQ=255) ccTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATACTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGCTGGTCGGGGTGCTGATCAAc > 2:199491/1‑149 (MQ=255) | GTACACGCCATTCGGCCTGCGTCTGTACGCCATCGG‑AGAATACCCGGAGGCGGCTAATGCCGCTGGCCTGTCGGTGCGTGGCTACGTGTTCGCCAGCTACCTGATCAGCGGTCTGTGCGGCAGCCTGGC‑CGCGTTTTGTTCGGCGGCCTGGTTCAGCGGCAGCACCACCGGTTCCGGCGAGATGCTGCTGTCCGTGGTGGCCATCGCTTTTCTTGGGGTGATCTTCTCCCAGCGTCTGCAGCCGAGCATCGGCGGCACGCTGCTGGCAACGTTGCTGGTCGGGGTGCTGATCAAC > NC_002947/3145177‑3145471 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |