Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,609,858 C→A 8.9% K125N (AAG→AAT) ‡ PP_3183 ← SCO1/SenC family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,609,8580CA 8.9% 161.2 / 6.5 56K125N (AAG→AAT) ‡PP_3183SCO1/SenC family protein
Reads supporting (aligned to +/- strand):  ref base C (22/29);  new base A (3/2);  total (25/31)
Fisher's exact test for biased strand distribution p-value = 6.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.12e-01

GTTGCCGATGATGAGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCACTGGGCAGGAATCGGA  >  NC_002947/3609717‑3610004
                                                                                                                                               |                                                                                                                                                  
gTTGCCGATGATGAGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTc                                                                                                                                               <  1:93959/147‑1 (MQ=255)
    ccGATGATGAGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCa                                                                                                                                           >  5:142281/1‑147 (MQ=255)
    ccGATGATGAGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAAAAGTTCGGCAtc                                                                                                                                         <  1:119200/149‑2 (MQ=255)
    ccGATGATGAGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGGTCGCCGGGCAGCAAGGGCCAAGCCTGGGCCGATGCCGAAAAGTTCGGCAt                                                                                                                                          <  1:189230/149‑1 (MQ=255)
     cGATGATGAGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAg                                                                                                                                        >  8:227440/1‑149 (MQ=255)
     cGATGATGAGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAg                                                                                                                                        >  2:179455/1‑149 (MQ=255)
     cGATGATGAGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAg                                                                                                                                        >  1:303592/1‑149 (MQ=255)
        tgatgaGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGt                                                                                                                                     <  3:193545/149‑1 (MQ=255)
          atgaGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGttt                                                                                                                                   <  1:18200/149‑1 (MQ=255)
             aGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGa                                                                                                                                 <  6:242142/148‑1 (MQ=255)
                      ttGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTTGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCggg                                                                                                                       <  1:227161/149‑1 (MQ=255)
                        gtgGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCgggg                                                                                                                      <  7:227440/148‑1 (MQ=255)
                         gtgTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCCTGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCgggg                                                                                                                      <  1:256409/146‑1 (MQ=255)
                                tGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCg                                                                                                                <  6:238707/146‑1 (MQ=255)
                                 ggAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTta                                                                                                             >  6:31140/1‑148 (MQ=255)
                                 ggAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTta                                                                                                             <  6:165016/148‑1 (MQ=255)
                                    gCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAgg                                                                                                         <  1:119480/149‑1 (MQ=255)
                                         cGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATc                                                                                                     >  1:267231/1‑148 (MQ=255)
                                              tCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGc                                                                                                <  6:57974/148‑1 (MQ=255)
                                                cAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGa                                                                                             >  6:273412/1‑149 (MQ=255)
                                                    ccATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATggcctgga                                                                                          >  5:33731/1‑141 (MQ=255)
                                                    ccATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGa                                                                                         <  4:314025/149‑1 (MQ=255)
                                                     cATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAg                                                                                        >  2:279726/1‑149 (MQ=255)
                                                       tCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAg                                                                                        >  3:227877/1‑147 (MQ=255)
                                                         gATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTa                                                                                      >  6:114972/1‑147 (MQ=255)
                                                          aTCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTagag                                                                                   <  7:96949/149‑1 (MQ=255)
                                                           tCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAgg                                                                                  <  8:30266/149‑1 (MQ=255)
                                                             cacaGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAgg                                                                                  >  8:118582/1‑147 (MQ=255)
                                                                aGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTATCGGCATAGCGTTTGAGGGGGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGAt                                                                             <  2:70052/149‑1 (MQ=255)
                                                                     cAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTTGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCtt                                                                        <  2:267231/149‑1 (MQ=255)
                                                                             ggcgTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCg                                                                                                                >  3:192689/1‑101 (MQ=255)
                                                                             ggagTAGTTGCTCGATGTCGTCGGGTTGGGAGGTGAGCAAGGTCCAGCCTGGTGCTATGCCGATCTTTTCGTCATAGCTTTTGAGTGTGGCGGGGTTGTCg                                                                                                                <  4:192689/98‑1 (MQ=255)
                                                                               cgTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCg                                                              <  2:303592/149‑1 (MQ=255)
                                                                                        tCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCAGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGACGACCCGGTCACagag                                                     >  8:304775/1‑149 (MQ=255)
                                                                                            tGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGAtt                                                 <  5:273412/149‑1 (MQ=255)
                                                                                              tcgtcgGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGAtttt                                               <  5:114972/149‑1 (MQ=255)
                                                                                                gtcgGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCt                                             <  6:142281/148‑1 (MQ=255)
                                                                                                         gCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGc                                    >  4:302121/1‑149 (MQ=255)
                                                                                                             gTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAg                                >  4:84478/1‑149 (MQ=255)
                                                                                                                  gCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGgcgc                            >  8:182097/1‑149 (MQ=255)
                                                                                                                      ggTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAg                        >  7:8975/1‑149 (MQ=255)
                                                                                                                         ccAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGAGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTATGTACCTGGCGTAGGAGCGCAGtt                      >  8:279117/1‑148 (MQ=255)
                                                                                                                          cAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTc                    >  3:159511/1‑149 (MQ=255)
                                                                                                                              ccTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAg                                                                               <  2:111672/87‑1 (MQ=255)
                                                                                                                              ccTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAg                                                                               >  1:111672/1‑87 (MQ=255)
                                                                                                                               cTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCAc                 <  5:4868/148‑1 (MQ=255)
                                                                                                                                  ggCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGTTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCACTg               <  1:279726/147‑1 (MQ=255)
                                                                                                                                  ggCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCACTg               <  5:31140/147‑1 (MQ=255)
                                                                                                                                    gctaTGCCGAAAAGTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGAtt                                                 >  6:107519/4‑111 (MQ=255)
                                                                                                                                     cGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCACTGGGCAg          <  3:84478/149‑1 (MQ=255)
                                                                                                                                      taTGCCGAAAAGTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCACTGGGCAg          >  2:327028/2‑148 (MQ=255)
                                                                                                                                      taTGCCGAAAAGTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCACTGGGCAg          >  5:30451/2‑148 (MQ=255)
                                                                                                                                          ccGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGGGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCACTGGGCAGGAATc     <  7:118582/149‑1 (MQ=255)
                                                                                                                                            gAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGtt                      >  1:1177/1‑130 (MQ=255)
                                                                                                                                            gAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGtt                      <  2:1177/130‑1 (MQ=255)
                                                                                                                                             aaCTTTTCGGCATAGGGTTTGAGGTGGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTATAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCACTGGGCAGGAATctta  <  8:8975/149‑4 (MQ=255)
                                                                                                                                               |                                                                                                                                                  
GTTGCCGATGATGAGGCTCAGGTTGTGGTCTTTGGAGCGGCCGTTTTCCAGGCCATCGATCCACAGCCCCAGGCTGCGGCGTAGTTGCTCGATGTCGTCGGGTTCGCCGGTCAGCAAGGTCCAGCCTGGGCCGATGCCGAACTTTTCGGCATAGCGTTTGAGGGTGGCGGGGGTGTCGTTATAGGGATCGATGCTGATGGAGTAGAGGAAGATGTCTTTGCCGACCCGGTCACCGAGGATTTTCTGTACCTGGCGTAGGCGCGCAGTTTCCACTGGGCAGGAATCGGA  >  NC_002947/3609717‑3610004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: