| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,974,392 | G→A | 6.2% | R27R (CGC→CGT) | PP_3503 ← | sigma‑54 dependent transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,974,392 | 0 | G | A | 6.2% | 188.3 / 2.3 | 64 | R27R (CGC→CGT) | PP_3503 | sigma‑54 dependent transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (31/29); new base A (2/2); total (33/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.48e-01 | |||||||||||
CAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGTTTAAC > NC_002947/3974244‑3974538 | cAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTg > 8:169478/1‑149 (MQ=255) aTCCATTCGGTGTTGCTGCGCGTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTgcg < 2:323565/149‑1 (MQ=255) ttCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGc < 2:179303/149‑1 (MQ=255) ggTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAg < 5:327378/149‑1 (MQ=255) gtgtTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAgg > 4:158518/1‑149 (MQ=255) ttGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTa < 1:239956/149‑1 (MQ=255) gcTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCgg < 6:183524/149‑1 (MQ=255) cTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGt > 7:155232/1‑149 (MQ=255) aTCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCACGCGCAATAGCCCGACATCGCACGTGTGGTCCCGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCCGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGc > 2:297989/1‑148 (MQ=255) aTCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGc > 2:293541/1‑148 (MQ=255) gTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgt > 7:27012/1‑149 (MQ=255) cTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgtcg > 6:268869/1‑148 (MQ=255) cTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgtcg > 4:79123/1‑148 (MQ=255) cTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgtcg > 7:258679/1‑148 (MQ=255) aCCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTg < 5:194236/134‑1 (MQ=255) aCCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTg > 6:194236/1‑134 (MQ=255) aCCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAggg < 8:258679/149‑1 (MQ=255) cgcgTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGt > 7:75486/1‑149 (MQ=255) gTCCGGGTGCCTCAGGTGCGAAGTCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTcga < 1:126975/149‑1 (MQ=255) gTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGAt > 6:100791/1‑147 (MQ=255) gTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATaa < 7:42481/149‑1 (MQ=255) gCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAg > 6:9335/1‑148 (MQ=255) tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATaa < 7:70231/144‑1 (MQ=255) tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATaa > 8:70231/1‑144 (MQ=255) tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCaaa > 7:193299/1‑149 (MQ=255) tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCaaa > 1:202466/1‑149 (MQ=255) aGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACg > 6:212191/1‑149 (MQ=255) tGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCg < 5:9335/149‑1 (MQ=255) gCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGt < 5:100791/149‑1 (MQ=255) cGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGtt > 7:145639/1‑149 (MQ=255) cGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGtt > 1:19143/1‑149 (MQ=255) ccTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCCGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGGCGACGATAAGCAAACGGCGTTGAGCg < 1:297989/149‑1 (MQ=255) ccTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCg < 1:293541/149‑1 (MQ=255) gcgcAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGgct > 5:893/1‑149 (MQ=255) aTAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCtgctgc < 8:155232/149‑1 (MQ=255) tgtgATCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGCGCGGCAGGCTGCTGCATGACCGATCCTTGgcgc > 4:48658/1‑149 (MQ=255) gtgGTCCAGCGCAG‑CCCCGAGCATACAGCTGTCCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGgc > 1:203440/1‑147 (MQ=255) gtgGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGgc < 2:203440/146‑1 (MQ=255) tCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGtt > 2:192383/1‑149 (MQ=255) tCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGtt > 2:73330/1‑149 (MQ=255) aGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGttttt < 3:79123/149‑1 (MQ=255) gcgcAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTg > 8:262567/1‑149 (MQ=255) gcgcAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTg > 1:119345/1‑149 (MQ=255) cccGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGtttttt < 1:192383/149‑1 (MQ=255) cGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACCAGCGGTGGCAACCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGa < 7:169478/149‑1 (MQ=255) gAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGaa < 6:893/149‑1 (MQ=255) cAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTaaaa < 8:193299/148‑1 (MQ=255) cAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTaaaa < 5:188580/148‑1 (MQ=255) cTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGc < 8:75486/149‑1 (MQ=255) gT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGaa < 6:2347/137‑1 (MQ=255) gT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGaa > 5:2347/1‑137 (MQ=255) cacaTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGtt > 4:313499/1‑149 (MQ=255) cacaTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGtt > 1:47838/1‑149 (MQ=255) caTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTtgt < 2:202466/149‑1 (MQ=255) aTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTtgtg > 6:324322/1‑149 (MQ=255) aTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTtgtg < 5:268869/149‑1 (MQ=255) cctggCCTGCGCAACGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGaa > 7:275410/5‑129 (MQ=255) cctggCCTGCGCAACGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGaa < 8:275410/125‑1 (MQ=255) ctggCCTGCGCAACGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGtttt > 7:113447/4‑123 (MQ=255) ctggCCTGCGCAACGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGtttt < 8:113447/120‑1 (MQ=255) aGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGcc < 7:262567/149‑1 (MQ=255) ccTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGtttttt < 1:213482/121‑1 (MQ=255) ccTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGtttttt > 2:213482/1‑121 (MQ=255) ccTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCg < 5:324322/149‑1 (MQ=255) gTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGTTTaa > 7:79836/1‑149 (MQ=255) ttGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGTTTAAc < 1:73330/149‑1 (MQ=255) | CAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAG‑CCCCGAGCATACAGCTGT‑CCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGTTTAAC > NC_002947/3974244‑3974538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |