| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,696,576 | C→T | 9.3% | P68L (CCC→CTC) | PP_4156 → | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,696,576 | 0 | C | T | 9.3% | 207.5 / 8.3 | 77 | P68L (CCC→CTC) | PP_4156 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (34/34); new base T (5/2); total (40/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.35e-01 | |||||||||||
CTCCGCCGCCGCCCGCAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGCTAGAAATCCTCGCCC > NC_002947/4696433‑4696722 | ctcCGCCGCCGCCCGCAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCccag < 6:61441/148‑1 (MQ=255) tcCGCCGCCGCCCGCAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCccag‑gc > 3:16681/1‑149 (MQ=255) cgccgccgcCCGCAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCccag‑gcca < 3:237344/149‑1 (MQ=255) cgccgccgcCCGCAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCccag‑gc > 4:84366/1‑147 (MQ=255) ccgccgccCGCAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGC‑CTGGGGCTCcagcgccagg < 5:206041/149‑1 (MQ=255) ccgcccgcAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCcaggcag < 4:261905/149‑1 (MQ=255) gcccgcAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGt > 1:238935/1‑149 (MQ=255) gcccgcAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGt < 2:238935/149‑1 (MQ=255) cccgcAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTc < 3:84366/149‑1 (MQ=255) ccgcAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGCCCTGCCCCTGTTCGACCGGGCCACGCGCCAAGCCTTGCCCCCCACCGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCACGTCa > 7:126230/1‑149 (MQ=255) cgcAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCa > 6:68129/1‑148 (MQ=255) cgcAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCAt > 5:163967/1‑149 (MQ=255) cAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCt < 2:37227/149‑1 (MQ=255) cAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCt < 4:157390/149‑1 (MQ=255) cAAGCTGGGCCGTGTGCCTTCAGCCGTAAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCt < 5:43046/149‑1 (MQ=255) gCTGGGCCGTGGGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGCCCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGcc < 8:127507/149‑1 (MQ=255) gtgtGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAAc < 8:52612/149‑1 (MQ=255) tgtgCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAAcc > 7:93035/1‑149 (MQ=255) tgtgCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAAcc > 8:178304/1‑149 (MQ=255) ccTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCt > 8:241179/1‑149 (MQ=255) ccGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGcc > 7:89698/1‑149 (MQ=255) aTGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCt > 1:232336/1‑149 (MQ=255) gCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGc < 8:93035/148‑1 (MQ=255) ccAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGcac > 8:184389/1‑148 (MQ=255) cAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGcaca > 1:297908/1‑148 (MQ=255) tGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCcaggcagg < 8:298916/96‑1 (MQ=255) tGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCcaggcagg > 7:298916/1‑96 (MQ=255) gAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGcc < 2:232336/148‑1 (MQ=255) gAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCt < 5:7157/149‑1 (MQ=255) gCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCcca > 8:190715/1‑80 (MQ=255) gCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCcca < 7:190715/80‑1 (MQ=255) ggAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGaa > 8:59656/1‑148 (MQ=255) ggAACTGGACCTGCCACTGTTCGACCGGGCCACGCGCAAAGCATTGCCCACCAACGCCGCCATGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATATGACAACTCAACCTACTCGATGACCAGGCCAGTCCATTGCCCAAAGGCCGGGaa > 8:203605/1‑148 (MQ=255) gACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAgcgc < 7:241179/147‑1 (MQ=255) tGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGAc > 3:8821/1‑148 (MQ=255) gCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCa > 1:138045/1‑149 (MQ=255) gCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGACCCCCAG‑GCCACGCAGCTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATAGCACAAAGGCCTGCAAAAGCGCATGAcc > 8:256776/1‑148 (MQ=255) cccTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATc < 4:8821/149‑1 (MQ=255) ccTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCTCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTTACCATCg < 4:146126/149‑1 (MQ=255) ccTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCg > 6:137523/1‑149 (MQ=255) gACCGTGCCACGCGCAAAGCCTTGCCCACCAACGACGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATgg < 5:327688/148‑1 (MQ=255) gACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGgc < 5:68129/149‑1 (MQ=255) ggCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGccc > 2:91515/1‑148 (MQ=255) gCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGa < 6:38761/149‑1 (MQ=255) ccACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAg > 2:299915/1‑149 (MQ=255) cACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGt > 1:201962/1‑149 (MQ=255) cACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGt > 7:277628/1‑149 (MQ=255) aCGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGtt < 7:178304/149‑1 (MQ=255) cgcgCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTg < 8:89698/149‑1 (MQ=255) gcgcAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGc < 1:91515/149‑1 (MQ=255) gagcAATGCCTTGCCCACCAACGCCGGCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCTACTCATCCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAATCGCCTGACCATCGCCATGGCGCCCGAGTTGc < 4:16681/147‑1 (MQ=255) cAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGa < 5:148567/149‑1 (MQ=255) aaaGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGAc > 6:255735/1‑149 (MQ=255) gCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTgg > 6:106592/1‑149 (MQ=255) ccTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGc < 5:137523/149‑1 (MQ=255) ttGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCg > 7:75835/1‑149 (MQ=255) cccACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTg < 7:59656/149‑1 (MQ=255) ccaccaACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTgg > 3:254666/1‑149 (MQ=255) caccaACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGAAGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCCCCCGAGTTGCAGACTGGCCGCTGGa > 4:61159/1‑149 (MQ=255) accaACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGag > 8:247507/1‑149 (MQ=255) ccaACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGagc > 2:208331/1‑149 (MQ=255) tggccTGGGGCTCCAGCGCCAG‑GCCAGGCAGGTCATCTGACAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACAGGCCGCTGGag > 3:71079/4‑141 (MQ=255) tggccTGGGGCTCCAGCGCCAG‑GCCAGGCAGGTCATCTGACAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACAGGCCGCTGGag < 4:71079/138‑1 (MQ=255) ctgcctggc‑ctggGGCTCCAGCGCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTgg < 3:286838/136‑1 (MQ=255) ctgcctggc‑ctggGGCTCCAGCGCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTgg > 4:286838/4‑139 (MQ=255) ctgcctggc‑ctggGGCTCCAGCGCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGc > 7:43618/4‑149 (MQ=255) ctgcctggc‑ctggGGCTCCAGCGCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGc > 3:274317/4‑149 (MQ=255) ctgcctggc‑ctggGGCTCCAGCGCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGc > 2:33084/4‑149 (MQ=255) ctgcctggc‑ctggGGCTCCAGCGCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGc > 4:263357/4‑149 (MQ=255) ccTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGCTAg < 2:138045/149‑1 (MQ=255) ccTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCGGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGc > 1:98466/1‑146 (MQ=255) tGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGa > 5:127394/1‑135 (MQ=255) tGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGa < 6:127394/135‑1 (MQ=255) gcgcTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGCTAGaaa < 5:255735/148‑1 (MQ=255) cgcTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGCTAGAAATc < 1:13046/149‑1 (MQ=255) ggAGCCCCAG‑GCCAGGCAGGTCATCTGCCATCTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGCTAGAAATCCTCg < 7:203605/149‑1 (MQ=255) gCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGCTAGAAATCCTCGccc < 7:184389/149‑1 (MQ=255) | CTCCGCCGCCGCCCGCAAGCTGGGCCGTGTGCCTTCAGCCGTGAGCATGGCAATCGCCCAACTGGAAGCGGAACTGGACCTGCCCCTGTTCGACCGGGCCACGCGCAAAGCCTTGCCCACCAACGCCGCCCTGGCGCTGGAGCCCCAG‑GCCAGGCAGGTCATCTGCCAACTCAACCTGCTCGATGCCCAGGCCCTGCAATTGCACAAAGGCCTGGAAAAGCGCCTGACCATCGCCATGGCGCCCGAGTTGCAGACTGGCCGCTGGAGCCAGCCGCTAGAAATCCTCGCCC > NC_002947/4696433‑4696722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |