Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,726,615 | G→A | 12.7% | A256V (GCG→GTG) | brnQ ← | branched‑chain amino acid transporter |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,726,615 | 0 | G | A | 12.7% | 133.1 / 8.1 | 55 | A256V (GCG→GTG) | brnQ | branched‑chain amino acid transporter |
Reads supporting (aligned to +/- strand): ref base G (24/23); new base A (4/3); total (29/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.10e-01 |
ACTCGGCGCAGGCACAGGTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCGCGAGCGAATGGCATTGACAAT > NC_002947/4726472‑4726760 | aCTCGGCGCAGGCACAGGTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATg > 3:230042/1‑149 (MQ=255) tCGGCGCAGGCACAGGTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCACGacatc > 1:144740/1‑145 (MQ=255) ggCGCAGGCACAGGTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGATGGTGGCGTCAGCCGCGATGTCGt < 7:47303/149‑1 (MQ=255) ggCACAGGTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGCCACCAGCCACGACATCGCGGCtga > 1:135649/1‑148 (MQ=255) gCACAGGTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCACGACATCGCGGCtgac < 2:144740/149‑3 (MQ=255) acaGGTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCtggtgg > 2:173884/1‑149 (MQ=255) acaGGTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGAGCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCTCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCtggtgg < 8:66835/149‑1 (MQ=255) ggTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGCCACCAGCCACGACATCGCGGCtgacgccac < 2:135649/149‑8 (MQ=38) gTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCAcc < 6:200928/149‑1 (MQ=255) aGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAg > 1:135326/1‑149 (MQ=255) ggCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAgg < 1:173884/149‑1 (MQ=255) gCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGc < 4:230042/149‑1 (MQ=255) gCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGc < 3:313796/149‑1 (MQ=255) aaCCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCgg > 8:210635/1‑148 (MQ=255) aaCCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGa < 8:267240/149‑1 (MQ=255) cgcgGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCACGacatcgc < 4:72778/125‑7 (MQ=255) cgcgGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCACGacatcgc > 3:72778/1‑119 (MQ=255) ggcaggcCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAg < 7:231996/149‑1 (MQ=255) cAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAggg < 7:92839/149‑1 (MQ=255) gcgcGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGc > 3:163295/1‑148 (MQ=255) gCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCCCCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGCACAGGCTGATGTAGACCAGGGCCCGCCCGaca > 5:331456/1‑149 (MQ=255) gCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGaca > 4:68333/1‑149 (MQ=255) cACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGacac > 3:110606/1‑149 (MQ=255) ccAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCCCCCAGGCGGAACAGGCTGATGTAGCCCAGGGCCAGCCCGACACCGGc > 7:154044/1‑148 (MQ=255) cGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCg > 4:167922/1‑149 (MQ=255) cccAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCgat > 3:253213/1‑149 (MQ=255) cccAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCgat > 4:276221/1‑149 (MQ=255) gggAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGatgatg < 5:11292/149‑1 (MQ=255) gAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGc < 4:163295/149‑1 (MQ=255) cGAAGGTATGCTGTACGTAGGCATGCAGCACCGCTGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAg > 2:44585/1‑149 (MQ=255) cGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCTCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGCCCAGGGCCAGCCCGACACCGGCGATCCGGCCGGCGATGCTGGCGTAg > 6:144486/1‑149 (MQ=255) gAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGatgatg < 7:31007/142‑1 (MQ=255) gAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGatgatg > 8:31007/1‑142 (MQ=255) aaGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCg < 4:253213/149‑1 (MQ=255) aGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCgg < 4:110606/149‑1 (MQ=255) tATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGt > 6:199709/1‑148 (MQ=255) aTGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACACAGGCGGAACATGCTGATGTAGACCCGGGCCAGCCAGACACCGGCGATAAGGCAGGCGATGATGGCGTAGCGGGTa > 4:249609/1‑148 (MQ=255) tGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTaa < 3:68333/148‑1 (MQ=255) cTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCa < 5:199709/149‑1 (MQ=255) tGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAg > 1:47093/1‑149 (MQ=255) cGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGCAGCGGGTAATCAGCCTc > 7:225220/1‑149 (MQ=255) gTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGc < 3:295186/129‑1 (MQ=255) gTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGc > 4:295186/1‑129 (MQ=255) aTGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACt > 2:169897/1‑149 (MQ=255) gcaCCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGaca > 3:89957/1‑149 (MQ=255) cgccgcACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACcgc > 2:119131/1‑149 (MQ=255) gccgcACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACcgcg < 3:276221/149‑1 (MQ=255) gcACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGCAGCGGGTAATCAGCCTCGGCGACTCGACACCGCgcga < 8:225220/149‑1 (MQ=255) aCCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCgcgagc < 7:210635/149‑1 (MQ=255) tggCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCGCGAGCGAATGGCa < 2:47093/149‑1 (MQ=255) gTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCGCGAGCGAATGGCATTGa < 2:135326/149‑1 (MQ=255) accAGCCACGACATCGCGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCGCGAGCGAATGGCATTGa > 5:185600/3‑149 (MQ=255) ccGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCGCGAGCGAATGGCATTGACaa > 6:288658/1‑147 (MQ=255) ccGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCGCGAGCGAATGGCATTGACaa < 5:288658/147‑1 (MQ=255) ccGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCGCGGCGACTCGGCACCGCGCGAGCGAATGGCATTGACAAt > 5:286756/1‑148 (MQ=255) cgcgATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCGCGAGCGAATGGCAtt < 7:56135/141‑1 (MQ=255) cgcgATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCGCGAGCGAATGGCAtt > 8:56135/1‑141 (MQ=255) | ACTCGGCGCAGGCACAGGTCAGGCCAACCGCGGTCACCAGGCAGGCCAGCGCGATCAGCACGGCCAGGAAGCCGCTGCCCAGGGAGCCGAAGGTATGCTGTACGTAGGCATGCAGCACCGCCGCACCGTTGGTGGCGTCAGCCGCGATGTCGTGGCTGGTGGCACCCAGGCGGAACAGGCTGATGTAGACCAGGGCCAGCCCGACACCGGCGATCAGGCCGGCGATGATGGCGTAGCGGGTAATCAGCCTCGGCGACTCGACACCGCGCGAGCGAATGGCATTGACAAT > NC_002947/4726472‑4726760 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |