Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,818,221 | A→T | 8.3% | intergenic (+122/+15) | PP_4242 → / ← pvdL | conserved protein of unknown function with Rhs repeat‑associated core domain/non‑ribosomal peptide synthetase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,818,221 | 0 | A | T | 8.3% | 173.3 / 4.5 | 60 | intergenic (+122/+15) | PP_4242/pvdL | conserved protein of unknown function with Rhs repeat‑associated core domain/non‑ribosomal peptide synthetase |
Reads supporting (aligned to +/- strand): ref base A (30/25); new base T (2/3); total (32/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.57e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
GGCGATTATTAGCCCTAGCTTTGAGGGCCTCTTCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGTGCTGCACTCGAACATCGCCCGCAG > NC_002947/4818088‑4818367 | ggCGATTATTAGCCCTAGCTTTGAGGGCCTCTTCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCTTGGCGCCCCtttcat < 8:181832/148‑6 (MQ=255) ccTAGCTTTGAGGGCCTCTTCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTc > 3:46182/1‑147 (MQ=255) cTAGCTTTGAGGGCCTCTTCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAg > 1:320045/1‑149 (MQ=255) aGGGCCTCTTCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCAt < 2:2097/149‑1 (MQ=255) gCCTCTTCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAg < 2:134005/149‑1 (MQ=255) ccTCTTCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAgg > 1:59299/1‑149 (MQ=255) ttCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGcccc < 4:100137/127‑1 (MQ=255) ttCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGcccc > 3:100137/1‑127 (MQ=255) aCGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCTTGGCGCCCCtttcat < 4:171629/114‑6 (MQ=255) aCGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCTTGGCGCCCCtttcat > 3:171629/1‑109 (MQ=255) aCGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGTGCCCCTGCCCATCACAGCCCCTc < 8:23928/126‑1 (MQ=255) aCGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGTGCCCCTGCCCATCACAGCCCCTc > 7:23928/1‑126 (MQ=255) cGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAg < 3:72788/149‑1 (MQ=255) aaTAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCgg < 3:153302/149‑1 (MQ=255) tAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTc > 6:48658/1‑149 (MQ=255) ccAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCa > 6:147519/1‑130 (MQ=255) ccAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCa < 5:147519/130‑1 (MQ=255) ccAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCg < 1:37348/147‑1 (MQ=255) ccAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCACATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCg > 2:37348/1‑147 (MQ=255) cAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGTCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTg > 2:9461/1‑149 (MQ=255) aaCGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTc < 6:50138/111‑1 (MQ=255) aaCGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTc > 5:50138/1‑111 (MQ=255) aaCGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGt > 3:304710/1‑149 (MQ=255) gCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGtcatca < 3:22448/149‑1 (MQ=255) gCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGtcatca < 2:66239/149‑1 (MQ=255) gACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCatcatc < 2:59299/149‑1 (MQ=255) cTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGTCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCa < 1:9461/149‑1 (MQ=255) tGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAg > 2:63107/1‑149 (MQ=255) tGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAg > 2:248381/1‑149 (MQ=255) tGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAg > 3:299047/1‑149 (MQ=255) gCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAgc > 1:290002/1‑149 (MQ=255) attgatCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACt > 1:34003/1‑149 (MQ=255) tGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCa > 2:125052/1‑135 (MQ=255) tGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCa < 1:125052/135‑1 (MQ=255) aaaTCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGc < 4:299047/149‑1 (MQ=255) aaTCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCGTGTCATCATCCAGCGCACTGCCCTGCAGcc > 6:240231/1‑149 (MQ=255) ggATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTg > 6:266761/1‑139 (MQ=255) ggATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTg < 5:266761/139‑1 (MQ=255) gATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGACAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCAGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGt > 5:101671/1‑148 (MQ=255) aTGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTAc < 2:34003/149‑1 (MQ=255) cTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCgg > 2:112847/1‑149 (MQ=255) tCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGc > 7:147884/1‑149 (MQ=255) aGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGcc > 2:53317/1‑148 (MQ=255) ccGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAAc < 8:184800/149‑1 (MQ=255) gtgtGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTc < 4:46182/149‑1 (MQ=255) tgCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCAc > 7:226476/1‑149 (MQ=255) cataccGACCAATGTAAGGTGAGCGAAGCGCCCCTGCCCATCACAGCCCCTCCTGTTCCTCCATTAGGTCACTGAGACGGTCGTCCTTGTCATCATCCAGCGCACTGCCCTGTAGCCGCTGTTCATTCTCGGGCAACGCCTCCACCGtg < 6:101671/145‑1 (MQ=255) aaccgtaCCAATGAAAGGGCGGCAAAGCGCCCCTGCCCATCACTGCCCCTCCTGTTCCGCCATCAGGTAATTTAGCCGGTCTACCTTGTAATAATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGtgc < 1:248381/143‑1 (MQ=255) aaCCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTTCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGtgc < 1:63107/149‑1 (MQ=255) cccGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGtgctg < 4:304710/149‑1 (MQ=255) ccGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGtgctg > 2:241881/1‑148 (MQ=255) aCCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGTGCTGCACt < 4:99329/149‑1 (MQ=255) aCCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGTGCTGCACt > 3:99329/1‑149 (MQ=255) atgggcaGGGGCGCTTGGCGCCCCTTCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGTGCTGCACTCg > 2:59186/7‑148 (MQ=255) tgggcaGGGGCGCTTGGCGCCCCTTCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGTGCTGCACTCGaa < 1:59186/144‑1 (MQ=255) aTGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAAc < 1:65772/126‑1 (MQ=255) aTGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAAc > 2:65772/1‑126 (MQ=255) aTGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCGGTACATACTCGGCCAACGCCTCCACCGTGCTGCACTCGaa > 2:237542/1‑149 (MQ=255) tGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGTGCTGCACTCGaa > 1:254411/1‑148 (MQ=255) ccAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGCCCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGTGCTGCACTCGCACCTCGACCGCAg > 5:164097/1‑149 (MQ=255) | GGCGATTATTAGCCCTAGCTTTGAGGGCCTCTTCACGAAAATAGCCAGCAACGAGCGACTGCCTGATTGATCTGCAAATCCGGATGAACGACTCAGCCGCAGTGTGCGCAACCCGACCAATGAAAGGGGCGCCAAGCGCCCCTGCCCATCACAGCCCCTCCAGTTCCGCCATCAGGTCACTGAGCCGGTCGACCTTGTCATCATCCAGCGCACTGCCCTGCAGCCCCTGTACATACTCGGCCAACGCCTCCACCGTGCTGCACTCGAACATCGCCCGCAG > NC_002947/4818088‑4818367 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |