New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	2 (0.030)	22 (0.380)	21/254	2.7	47.4%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	47 (0.820)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGAC  >  NC_002947/4808034‑4808327                                                                                                                                                  |                                                                                                                                                     ggCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTCGTCGGCTGGAGAGTTTAAGCGTCTGGGAGTTAGAGCGCCGCCCTCGcgg                                                                                                                                                   >  5:207909‑M1/1‑146 (MQ=255)      tGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGCGAGTTTCAGCGCCTGGGAGATCTACGCCCGGACAGTTTCAGCGCCTCGGAGCTCGCGCGACGCCCGCGaggcgct                                                                                                                                               >  4:353261‑M1/1‑141 (MQ=255)         gCGGAATTCGCGCTGTGGCGGGAAGGCGTTGGGCGGTAGGGTTGCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgc                                                                                                                                           <  7:153026‑M1/149‑12 (MQ=255)           ggttttCGCGCGTAGGCGGCTAGGCGTGCGGCTGCAGCTGCGCCGCGCCTGGGAGGGGATCGCCGGGGGAGTCTCTGCGCCGGGGAGGTGTTCGCCGGGAGAGTTTCCGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCgcgg                                                                                                                                         <  6:227337/145‑1 (MQ=12)            gAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcggg                                                                                                                                        <  1:136414‑M1/149‑15 (MQ=255)             aaTTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcggg                                                                                                                                        >  4:185333‑M1/1‑134 (MQ=255)                              gTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtt                                                                                                                      <  3:180048‑M1/149‑33 (MQ=255)                                    tttgggcgggAGGGTTGCAGCGCCTGGGAGGTGTTCGGCGGTTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgttt                                                                                                                 <  3:353261‑M1/144‑38 (MQ=255)                                           ggtagtttttcattgcCTGGTAGGTGTTCGGCGGGTGTTTTTCAGCGGCTGGTAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaa                                                                                                         <  1:281525‑M1/143‑46 (MQ=255)                                                   ttCAGCGCCTGGGAGGTGTTCGCGGGGTTATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgct                                                                                                                              <  4:155879‑M1/120‑25 (MQ=255)                                                   ttCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTATCAGCGCCTGGGAGATCGAGCGACGCAAGCGcggcgcttcgcgggtaaccccgct                                                                                                                              >  3:155879‑M1/1‑96 (MQ=255)                                                    gctgcggctgGGAGTCTTTCGCCGGGTGTTTGTCAGCGCCTGTGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcct                                                                                                 <  4:212897‑M1/145‑54 (MQ=255)                                                              ggAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgc                                                                                      >  5:38609‑M1/1‑85 (MQ=255)                                                               gAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGACTTTCAGCGCCTGGGAGATCGAGCGCCCCCCGAGcggcgcttcgcgggtaaacccgctcctacgttggtatcgggccatttattcatgcgggatttgcg                                                                                     >  8:300328‑M1/1‑84 (MQ=255)                                                                                    tCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgt                                                                >  7:220036‑M1/1‑63 (MQ=255)                                                                                         gcCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcga                                                           <  3:185333‑M1/149‑92 (MQ=255)                                                                                              ggAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatc                                                       >  8:173085‑M1/1‑53 (MQ=255)                                                                                              ggAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatc                                                       <  7:173085‑M1/148‑96 (MQ=255)                                                                                                 ggTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgt                                                   >  3:255530‑M1/1‑50 (MQ=255)                                                                                                  gtgtTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtc                                                  <  1:56612‑M1/149‑101 (MQ=255)                                                                                                            ggAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaac                                          >  5:145761‑M1/1‑39 (MQ=255)                                                                                                                  tttCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgt                                                <  5:330010‑M1/135‑103 (MQ=255)                                                                                                                  tttCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgt                                                >  6:330010‑M1/1‑33 (MQ=255)                                                                                                                                       gcgcCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggag             <  4:217383‑M1/149‑138 (MQ=255)                                                                                                                                        cgccgcCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagg            >  4:64876‑M1/1‑11 (MQ=255)                                                                                                                                         gccgccCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagg            >  1:354194‑M1/1‑10 (MQ=255)                                                                                                                                            gcccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggatt        <  3:64876‑M1/149‑143 (MQ=255)                                                                                                                                              ccgcGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTACAACGCCACCTCCCCTCGAAAATCcaccaaca       >  6:320920/1‑148 (MQ=255)                                                                                                                                                gcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggcc    <  2:354194‑M1/149‑147 (MQ=255)                                                                                                                                                  gcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccag  <  8:139004‑M1/149‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGAC  >  NC_002947/4808034‑4808327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.