Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,229,201:1 +C 12.8% intergenic (‑143/+33) PP_4606 ← / ← PP_4607 ferric siderophore receptor/transmembrane sensor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,229,2011.C12.8% 159.6 / 20.2 47intergenic (‑143/+33)PP_4606/PP_4607ferric siderophore receptor/transmembrane sensor
Reads supporting (aligned to +/- strand):  ref base . (22/19);  new base C (3/3);  total (25/22)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.47e-01

CTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCGCTGACCTTG  >  NC_002947/5229053‑5229348
                                                                                                                                                      |                                                                                                                                                   
cTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACggg                                                                                                                                                      >  2:158319/1‑149 (MQ=255)
    aTGGACGCAGACCTGCGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTCTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACggggg                                                                                                                                                   <  1:58827/148‑1 (MQ=255)
    aTGGACGCAGACCTGCGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACggggg                                                                                                                                                   >  2:58827/1‑147 (MQ=255)
        aCGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACgggggg                                                                                                                                                  >  4:124031/1‑144 (MQ=255)
        aCGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACgggggg                                                                                                                                                  <  3:124031/144‑1 (MQ=255)
         cGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTAcc                                                                                                                                            <  7:94006/149‑1 (MQ=255)
              aCCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGa                                                                                                                                       <  3:236595/149‑1 (MQ=255)
                   tgAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCCCCGTAGGGGCGGGTTTACCCGCGAagag                                                                                                                                   <  2:174234/148‑1 (MQ=38)
                             attattGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTAc                                                                                                                                             >  4:249632/1‑128 (MQ=255)
                             attattGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTAc                                                                                                                                             <  3:249632/128‑1 (MQ=255)
                             agtcttGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGGGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAg                                                                                                                         <  5:83809/144‑1 (MQ=255)
                              ttattGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAgg                                                                                                                        >  7:111144/1‑148 (MQ=255)
                                    cGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTAc                                                                                                                 <  8:279573/149‑1 (MQ=255)
                                    cGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCGGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGGGAAGAGGCTGGCACAGGCAACTAc                                                                                                                 <  5:265976/149‑1 (MQ=255)
                                           atcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAAc                                                                                                            >  7:223474/1‑147 (MQ=255)
                                                  tttCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTgg                                                                                                                              <  2:302594/122‑1 (MQ=255)
                                                  tttCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACCGGGGGTTTACCCGTGAAGAGGCTgg                                                                                                                              >  1:302594/1‑122 (MQ=255)
                                                        tCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGccc                                                                                             >  8:173655/1‑149 (MQ=255)
                                                          aTTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTAAAGAGTCTGGCAAAGGCAACTACCGAACCAGGGTCAAACGcccc                                                                                            >  6:307839/1‑148 (MQ=255)
                                                                 ggATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGt                                                                                    >  8:64393/1‑149 (MQ=255)
                                                                   tctccACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTc                                                                                   <  3:67585/145‑1 (MQ=255)
                                                                       cACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAg                                                                                                                         >  5:124282/1‑106 (MQ=255)
                                                                       cACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAg                                                                                                                         <  6:124282/106‑1 (MQ=255)
                                                                       cACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTc                                                                                   >  4:67585/1‑144 (MQ=255)
                                                                       cACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCg                                                                              >  4:202632/1‑149 (MQ=255)
                                                                        aCGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGt                                                                             <  1:158319/149‑1 (MQ=255)
                                                                              tGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGcac                                                                                                                           <  8:203291/97‑1 (MQ=255)
                                                                              tGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGcac                                                                                                                           >  7:203291/1‑97 (MQ=255)
                                                                                ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAAcc                                                                     <  3:202632/149‑1 (MQ=255)
                                                                                           gtgCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGc                                                          >  6:292323/1‑149 (MQ=255)
                                                                                              ccTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGcc                                                         >  5:160213/1‑147 (MQ=255)
                                                                                               cTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAg                                                      >  2:272044/1‑149 (MQ=255)
                                                                                                 ggAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGc                                                     >  5:38954/1‑148 (MQ=255)
                                                                                                  gAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGc                                                     <  5:307839/147‑1 (MQ=255)
                                                                                                  gAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCg                                                    >  7:61876/1‑148 (MQ=255)
                                                                                                    aaTATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAAt                                                 >  8:41513/1‑149 (MQ=255)
                                                                                                           ttGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAgcg                                           <  6:160213/148‑1 (MQ=255)
                                                                                                               cTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCcag                                       <  6:172580/149‑1 (MQ=255)
                                                                                                                       gcCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCt                               >  8:205441/1‑149 (MQ=255)
                                                                                                                             tcacgGGTAAACCCCCCGTAGGGGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCa                         >  1:194240/4‑149 (MQ=37)
                                                                                                                               gcgGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCAcc                       <  7:41513/149‑1 (MQ=255)
                                                                                                                               acgGGTAAACCCCCCGTAGGGGCGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCAcc                       >  5:189684/2‑149 (MQ=38)
                                                                                                                                cgGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCg                      <  5:292323/149‑1 (MQ=255)
                                                                                                                                cgGGTAAACCCCCCGTAGGGGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCg                      <  2:194240/149‑1 (MQ=38)
                                                                                                                                  ggTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCgg                     >  3:108692/1‑148 (MQ=255)
                                                                                                                                   gTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCggg                    >  4:171979/1‑148 (MQ=255)
                                                                                                                                   gTAAACCCCCCGTAGGGGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCggg                    >  2:38712/1‑148 (MQ=38)
                                                                                                                                    tAAACCCCCCGTAGGGGCGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGaa                  <  6:189684/149‑1 (MQ=39)
                                                                                                                                       aCCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCt               >  1:3881/1‑149 (MQ=255)
                                                                                                                                          cGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCCCCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGcc            >  6:33517/1‑149 (MQ=255)
                                                                                                                                            ccccTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCGc          <  8:61876/149‑1 (MQ=255)
                                                                                                                                              ccTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCGCTg        <  8:111144/149‑1 (MQ=255)
                                                                                                                                                    gggggTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCGCTGACCTTg  <  7:64393/149‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                   
CTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCCTACGGGGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACGCCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCGCTGACCTTG  >  NC_002947/5229053‑5229348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: