Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 684,846:1 +A 7.1% coding (1401/2400 nt) cadA‑II ← cadmium translocating P‑type ATPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947684,8461.A 7.1% 217.8 / 10.2 56coding (1401/2400 nt)cadA‑IIcadmium translocating P‑type ATPase
Reads supporting (aligned to +/- strand):  ref base . (26/26);  new base A (2/2);  total (28/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.39e-01

GCCGGCCAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCCCAGCCAGCCAC  >  NC_002947/684699‑684987
                                                                                                                                                    |                                                                                                                                             
gcCGGCCAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCa                                                                                                                                              <  6:277914/149‑1 (MQ=255)
  cGGCCAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAgg                                                                                                                                            <  4:118830/149‑1 (MQ=255)
     ccAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATg                                                                                                                                         <  3:220186/149‑1 (MQ=255)
      cAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGc                                                                                                                                        >  5:177905/1‑149 (MQ=255)
           ggTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTGATCAAGGATGCCgaag                                                                                                                                   <  1:131782/149‑4 (MQ=255)
                aGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTg                                                                                                                                    >  4:185284/1‑143 (MQ=255)
                aGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTg                                                                                                                                    <  3:185284/143‑1 (MQ=255)
                  gTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGgcgggcgg                                                                                                                            <  2:152861/149‑1 (MQ=255)
                            ttGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCgg                                                                                                                   >  7:173110/1‑148 (MQ=255)
                            ttGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCgg                                                                                                                   >  4:166195/1‑148 (MQ=255)
                                 gTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCgg                                                                                                             >  6:264395/1‑149 (MQ=255)
                                  tCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGc                                                                                                            >  5:64079/1‑149 (MQ=255)
                                  tCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGc                                                                                                            >  7:150154/1‑149 (MQ=255)
                                    cAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGgcgggcgg                                                                                                                            <  5:3192/131‑1 (MQ=255)
                                    cAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGgcgggcgg                                                                                                                            >  6:3192/1‑131 (MQ=255)
                                         ccTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATc                                                                                                     >  3:63301/1‑149 (MQ=255)
                                                     ccaccTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTg                                                                                         >  5:197995/1‑149 (MQ=255)
                                                      caccTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGc                                                                                                            <  6:184594/129‑1 (MQ=255)
                                                      caccTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGc                                                                                                            >  5:184594/1‑129 (MQ=255)
                                                            cGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCTAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGc                                                                                  <  6:177905/149‑1 (MQ=255)
                                                                        ggTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAgg                                                                      <  4:164745/149‑1 (MQ=255)
                                                                         gTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAggg                                                                     >  5:39496/1‑149 (MQ=255)
                                                                         gTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAggg                                                                     <  6:197995/149‑1 (MQ=255)
                                                                          tGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAgggc                                                                    >  1:262556/1‑148 (MQ=255)
                                                                           gAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAgggg                                                                    >  8:130525/1‑148 (MQ=255)
                                                                              ggTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAgg                                                                <  7:130525/149‑1 (MQ=255)
                                                                               gTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGc                                                               <  4:63301/149‑1 (MQ=255)
                                                                                tGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCg                                                              <  4:23671/149‑1 (MQ=255)
                                                                                 gCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGa                                                             >  6:136270/1‑149 (MQ=255)
                                                                                  ccGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGAt                                                            <  5:264395/149‑1 (MQ=255)
                                                                                   cGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATg                                                           <  3:166195/149‑1 (MQ=255)
                                                                                         tGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAg                                                      <  6:39496/148‑1 (MQ=255)
                                                                                             gAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGGCGAGGGCGCAGGGGCAGGCGATGACCAGCacgg                                                 <  8:173110/149‑1 (MQ=255)
                                                                                             gAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATCATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacgg                                                 >  5:224633/1‑149 (MQ=255)
                                                                                              aaCACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacgg                                                 <  1:120302/148‑1 (MQ=255)
                                                                                                   tACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacggcgacgg                                           >  4:239119/1‑149 (MQ=255)
                                                                                                   tACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacggcgacg                                            >  7:71144/1‑148 (MQ=255)
                                                                                                     cgcgGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacggcgacg                                            <  8:71144/146‑1 (MQ=255)
                                                                                                      gcgGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGt                                        >  4:73599/1‑149 (MQ=255)
                                                                                                        ggTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGAcc                                                        <  2:98045/131‑1 (MQ=255)
                                                                                                        ggTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGAcc                                                        >  1:98045/1‑131 (MQ=255)
                                                                                                              ccGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAgc                                >  5:38240/1‑149 (MQ=255)
                                                                                                                    gggCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGa                                                                               <  2:25809/96‑1 (MQ=255)
                                                                                                                    gggCACGCTCCAGGGCTTCGGCATCCTTGAACAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGa                                                                               >  1:25809/1‑96 (MQ=255)
                                                                                                                     ggCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGttt                         >  2:25349/1‑149 (MQ=255)
                                                                                                                      gCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGTCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGTGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTc                        <  3:239119/149‑1 (MQ=255)
                                                                                                                          gCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGc                    <  6:64079/149‑1 (MQ=255)
                                                                                                                          gCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGc                    <  8:150154/149‑1 (MQ=255)
                                                                                                                              cAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTa                >  4:281766/1‑149 (MQ=255)
                                                                                                                               aGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGCTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTAc               >  5:162498/1‑149 (MQ=255)
                                                                                                                                   cTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCcca           <  5:136270/149‑1 (MQ=255)
                                                                                                                                    cacGGCATCCTGATCAAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCccag          >  7:257593/3‑149 (MQ=255)
                                                                                                                                     acGGCATCCTGATCAAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGCGGCAGGCGATGACCAGCACGGCGACGGCGATGATCAGCGCGGTTTCCAGCGCTACAccaga         >  8:196393/2‑148 (MQ=255)
                                                                                                                                      cGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCccagc         <  7:200776/148‑1 (MQ=255)
                                                                                                                                      cGGCATCCTTGATCAGGATGCAGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGAAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCccagc         <  7:197225/148‑1 (MQ=255)
                                                                                                                                        gCATCCTGATCAAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCccagccag      <  8:257593/149‑1 (MQ=255)
                                                                                                                                              ttGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCCCAGccagccac  >  7:63634/1‑147 (MQ=255)
                                                                                                                                                    |                                                                                                                                             
GCCGGCCAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATCAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCCCAGCCAGCCAC  >  NC_002947/684699‑684987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: