| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 461126 = | 65 (1.330) | 6 (0.130) | 6/248 | NT | 9.3% | coding (1339/2301 nt) | pqqF | coenzyme PQQ synthesis protein F |
| ? | NC_002947 | 461167 = | 56 (1.210) | coding (1298/2301 nt) | pqqF | coenzyme PQQ synthesis protein F | |||||
CTGCCCCATGCCAAGGCGCAACCGCTGCCGGCAGCGCTGAAGATCAGTGACCAGCTTCCGCCCGCGCGCCAATTCGCAGCGCTGTACCTGCGCTGGCATGTACCTTCACCTATGCGCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/461279‑461126‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcATAGGTGAAGGTACATGCCAGCGCAGGTACAGCGCTGCGAATTGGCGCGCGGGCGGAAGCTGGTCACTGATCTTCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCA > NC_002947/461167‑461308 CTGCCCCATGCCAAGGCGCAACCGCTGCCGGCAGCGCTGAAGATCAGTGACCAGCTTCCGCCCGCGCGCCAATTCGCAGCGCTGTACCTGCGCTGGCATGTACCTTCACCTATGCGCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCT > 5:176097/1‑149 GGCAGCGCTGAAGATCAGTGACCAGCTTCCGCCCGCGCGCCAATTCGCAGCGCTGTACCTGCGCTGGCATGTACCTTCACCTATGCGCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCTGGCGC < 7:272017/125‑1 GGCAGCGCTGAAGATCAGTGACCAGCTTCCGCCCGCGCGCCAATTCGCAGCGCTGTACCTGCGCTGGCATGTACCTTCACCTATGCGCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCTGGCGC > 8:272017/1‑125 GCAGCGCTGAAGATCAGTGACCAGCTTCCGCCCGCGCGCCAATTCGCAGCGCTGTACCTGCGCTGGCATGTACCTTCACCTATGCGCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCTGGC < 6:269837/122‑1 CCTATGCGCCAGCCGTTACAGCGTGTGCTGGAAC‑GG‑‑CTGGCGCATAGGTGAAGGTACATGCCAGCGCAGGTACAGCGCTGCGAATTGGCGCGCGGGCGGAAGCTGGTCACTGATCTTCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCAT > 1:187932/1‑149 TATGCGCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCTGGCGCATAGGTGAAGGTACATGCCAGCGCAGGTACAGCGCTGCGAATTGGCGCGCGGGCGGAAGCTGGTCACTGATCTTCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCA > 4:102707/1‑149 CGCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCTGGCGCATAGGTGAAGGTACATGCCAGCGCAGGTACAGCGCTGCGAATTGGCGCGCGGGCGGAAGCTGGTCACTGATCTTCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCATGGG > 6:254773/1‑149 GCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCTGGCGCATAGGTGAAGGTACATGCCAGCGCAGGTACAGCGCTGCGAATTGGCGCGCGGGCGGAAGCTGGTCACTGATCTTCAGCGCTGCCGGCAGCGGTTGCGCCTT < 5:124774/140‑1 GCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCTGGCGCATAGGTGAAGGTACATGCCAGCGCAGGTACAGCGCTGCGAATTGGCGCGCGGGCGGAAGCTGGTCACTGATCTTCAGCGCTGCCGGCAGCGGTTGCGCCTT > 6:124774/1‑140 GAACAGGCCCTGGCGCATAGGTGAAGGTACATGCCAGCGCAGGTACAGCGCTGCGAATTGGCGCGCGGGCGGAAGCTGGTCACTGATCTTCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGG < 3:102707/147‑1 CTGGCGCATAGGTGAAGGTACATGCCAGCGCAGGTACAGCGCTGCGAATTGGCGCGCGGGCGGAAGCTGGTCACTGATCTTCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCA < 4:291964/149‑1 CTGCCCCATGCCAAGGCGCAACCGCTGCCGGCAGCGCTGAAGATCAGTGACCAGCTTCCGCCCGCGCGCCAATTCGCAGCGCTGTACCTGCGCTGGCATGTACCTTCACCTATGCGCCAGCCGTTACAGCGTGTGCTGGAACAGGCCCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/461279‑461126‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgcATAGGTGAAGGTACATGCCAGCGCAGGTACAGCGCTGCGAATTGGCGCGCGGGCGGAAGCTGGTCACTGATCTTCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCA > NC_002947/461167‑461308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |