New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 611927 =NA (NA)11 (0.240) 9/244 NT NA coding (824/966 nt) PP_0526 transposase
?NC_002947 611970 = NA (NA)coding (867/966 nt) PP_0526 transposase

TTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/612083‑611927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttggtgatCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAAT  >  NC_002947/611970‑612117
                                                                                                                                                                                                                                                                                                                 
TTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGC                                                                                                                                                              <  5:98036/149‑1
  GCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTT                                                                                                                                                            >  1:191477/1‑149
  GCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTT                                                                                                                                                            >  6:947/1‑149
   CAGCCCCTGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTG                                                                                                                                                           <  5:31348/149‑1
   CAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTG                                                                                                                                                           <  2:199419/149‑1
   CAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTG                                                                                                                                                           <  5:163382/149‑1
   CAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTT                                                                                                                                                            <  3:214460/148‑1
    AGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCATTCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGG                                                                                                                                                          <  1:242954/149‑1
    AGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGG                                                                                                                                                          <  7:53444/149‑1
     GCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGT                                                                                                                                                         <  5:172849/149‑1
      CCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTG                                                                                                                                                        <  7:249511/149‑1
      CCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGT                                                                                                                                                         >  4:121993/1‑148
       CCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGagat                                                                                                                                                       >  5:252666/1‑145
       CCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGA                                                                                                                                                       >  3:215954/1‑149
       CCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTT                                                                                                                                                            <  6:252666/144‑1
        CCAGCCTCCGCGGGCGGGCTTGCCACCTCGGTTATATATCTCGGGCTTCCAGGCGGCCTGATGCCACATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGAT                                                                                                                                                      <  2:149627/149‑1
        CCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCTGTCGGACTGATGCCTCATCAGGCCGAAGGACAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGAT                                                                                                                                                      >  8:232766/1‑149
        CCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGAT                                                                                                                                                      >  3:216345/1‑149
        CCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGAT                                                                                                                                                      >  7:292565/1‑149
        CCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGAT                                                                                                                                                      <  1:37980/149‑1
        CCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGAT                                                                                                                                                      >  2:234653/1‑149
        CCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGAT                                                                                                                                                      >  5:42376/1‑149
        CCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTG                                                                                                                                                           >  3:18949/1‑144
        CCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTG                                                                                                                                                           <  4:18949/144‑1
                                                                                                               AGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGC                                               >  4:253649/1‑149
                                                                                                                GGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCT                                              >  4:13688/1‑149
                                                                                                                GGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGACATATAAAACGGAGGTGCCAAGCCGGCCACCAGAGG                                                >  8:106962/1‑147
                                                                                                                  ATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGG                                            >  5:6245/1‑149
                                                                                                                  ATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGG                                            <  6:6245/149‑1
                                                                                                                   TCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGG                                           >  6:275439/1‑149
                                                                                                                   TCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGG                                                >  1:305739/1‑144
                                                                                                                   TCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGG                                                <  2:305739/144‑1
                                                                                                                    CACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCAGATGAGGCATCAGGCCGACAGGAAGCCCCAGATATAAACCGGACGTGCCAAGCCGGCCAGCTGAGGCTGGGG                                          >  2:78979/1‑149
                                                                                                                          GGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAA                                    <  7:106962/149‑1
                                                                                                                                AGTGGTTTTCTTCCCCCGGGCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAG                               <  1:78979/148‑1
                                                                                                                                                     TTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAG          >  1:176374/1‑148
                                                                                                                                                     TTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAG          >  5:13167/1‑148
                                                                                                                                                     TTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAG          >  5:98465/1‑148
                                                                                                                                                       GGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTAT       >  7:222528/1‑149
                                                                                                                                                       GGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGT         <  2:164532/147‑1
                                                                                                                                                       GGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGT         <  4:64230/147‑1
                                                                                                                                                       GGTGATCCTGGGACGTCGCTTGGCTCGGCTGGCCTGCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTA        <  8:217915/148‑1
                                                                                                                                                        GTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATC      <  7:145801/149‑1
                                                                                                                                                        GTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATC      >  7:15421/1‑149
                                                                                                                                                        GTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATC      <  5:139693/149‑1
                                                                                                                                                         TGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATC      >  2:36343/1‑148
                                                                                                                                                           ATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAA   >  3:116936/1‑149
                                                                                                                                                            TCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGTTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAAT  >  5:312603/1‑149
                                                                                                                                                                                                                                                                                                                 
TTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGGGCTTCCAGTCGGCCTGATGCCTCATCAGGCCGAAGGCCAGCCGAGCCAAGCGACGTGCAAGGATCACCAAGGCTTGAGTGGTTTTCTTCCCCCGGGCTTGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/612083‑611927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttggtgatCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAAT  >  NC_002947/611970‑612117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.