| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 660410 | 51 (1.040) | 3 (0.070) | 3/242 | NT | 5.7% | coding (1456/1914 nt) | speA | biosynthetic arginine decarboxylase |
| ? | NC_002947 | = 660462 | 52 (1.150) | coding (1508/1914 nt) | speA | biosynthetic arginine decarboxylase | |||||
CGTGTGCCGCCGCCTGCACAACTCGCTGAAAGCCCGCCAGCGCTCGCACCGCCAGGTGCTGGACGAGCTGAACGACAAGCTGGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCAGACACCTGGGCCATCGGCCAGGTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/660256‑660410‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtcctgcAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCTCGTCCA < NC_002947/660462‑660315 gtTGTGCAGGCGGCGGCACAACTCGCTGAAAGCCCGCCAGCGCTCGCACCGCCAGGTGCTGGACGAGCTGAACGACAAGCTGGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCAGACACCTGGGCCATCGGCCAGG > 6:18970/3‑149CGTGTGCCGCCGCCTGCACAACTCGCTGAAAGCCCGCCAGCGCTCGCACCGCCAGGTGCTGGACGAGCTGAACGACAAGCTGGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCAGACACCTGGGCCATCGGCCAGG < 5:269698/149‑1 CCGCCTGCACAACTCGCTGAAAGCCCGCCAGCGCTCGCACCGCCAGGTGCTGGACGAGCTGAACGACAAGCTGGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCAGACACCTGGGCCATCGGCCAGGTC < 2:264486/142‑1 CCGCCTGCACAACTCGCTGAAAGCCCGCCAGCGCTCGCACCGCCAGGTGCTGGACGAGCTGAACGACAAGCTGGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCAGACACCTGGGCCATCGGCCAGGTC > 1:264486/1‑142 GCTGGACGAGCTGAACGACAAGCTGGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCAGACACCTGGGCCATCGGCCAGGTCCTGCAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATC > 6:298363/1‑149 CTGAACGACAAGCTGGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCAGACACCTGGGCCATCGGCCAGGTCCTGCAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACC < 3:243171/148‑1 AACGACAAGCTGGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCAGACACCTGGGCCATCGGCCAGGTCCTGCAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTG < 5:298363/147‑1 gctcTCCTGCTATACCGCACGGCGGATCGGCGCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGATGTTGCAGATGTAGTTGTCGGCCAGCTTGTCGTTCA < 6:242957/145‑1 GTCCTGCAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCT < 2:268229/149‑1 TCCTGCAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCTC > 6:277212/1‑149 CTGCAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGAACGGCAGCACCTGGCCGAAGGCCCAGGTGTCTGGCAGGCTCTGGCACACCGAGAAGTTGCAGATGTACTAGACGGCCAGCTTGTCGTTCAGagaac > 5:242957/1‑144 TGCAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCTCGTC > 3:114176/1‑149 TGCAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCTCGTC > 6:21570/1‑149 GCAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCTCGTC > 5:18970/1‑148 CAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCTCGTCCA < 6:271511/149‑1 CAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCTCGTCC < 7:108466/148‑1 CAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCTCGTC < 4:269272/147‑1 CGTGTGCCGCCGCCTGCACAACTCGCTGAAAGCCCGCCAGCGCTCGCACCGCCAGGTGCTGGACGAGCTGAACGACAAGCTGGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCAGACACCTGGGCCATCGGCCAGGTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/660256‑660410‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtcctgcAATACCGCACGCCGCATCGGCTCTTCGTCCAAGCGGTGCAGCGGGATGATCGGCAGGACCTGGCCGATGGCCCAGGTGTCTGGCAGGCTCTGGAACACCGAGAAGTTGCAGATGTACTTGTCGGCCAGCTTGTCGTTCAGCTCGTCCA < NC_002947/660462‑660315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |