New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	901659 =	54 (1.100)	3 (0.060)	3/248	NT	5.6%	coding (48/963 nt)	trxB	thioredoxin reductase
	?	NC_002947	901724 =	50 (1.080)					coding (113/963 nt)	trxB	thioredoxin reductase

ATCAGAGCCGGGCCGGTCAGGCCGTGGGGGTCGCCCGGCCAGTTGTCGACTTCGGTGGTGGTGGTCAGCTGGCCACCCGCCTGCATGCCGGTGATCAGCAGCGGCTTGAGGTTGGCACGGGCGGCATACACCGCAGCGCTGTAACCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/901808‑901659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcaTGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTAT  >  NC_002947/901724‑901817                                                                                                                                                                                                                                                      ATCAGAGCCGGGCCGGTCAGGCCGTGGGGGTCGCCCGGCCAGTTGTCGACTTCGGTGGTGGTGGTCAGCTGGCCACCCGCCTGCATGCCGGTGATCAGCAGCGGCTTGAGGTTGGCACGGGCGGCATACACCGCAGCGCTGTAACCGG                                                                                                  >  3:251991/1‑148                                                                                   GCATGCCGGTGATCAGCAGCGGCTTGAGGTTGGCACGGGCGGCATACACCGCAGCGCTGTAACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTC               >  3:93355/1‑149                                                                                     ATGCCGGTGATCAGCAGCGGCTTGAGGTTGGCACGGGCGGCATACACCGCAGCGCTGTAACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCT              >  5:148572/1‑148                                                                                                 AGCAGCGGCTTGAGGTTGGCACGGGCGGCATACACCGCAGCGCTGTAACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTAT  <  6:148572/148‑1                                                                                                                                                ACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAG       >  8:30391/1‑96                                                                                                                                                ACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTCGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAG       <  7:30391/96‑1                                                                                                                                                                                                                                                      ATCAGAGCCGGGCCGGTCAGGCCGTGGGGGTCGCCCGGCCAGTTGTCGACTTCGGTGGTGGTGGTCAGCTGGCCACCCGCCTGCATGCCGGTGATCAGCAGCGGCTTGAGGTTGGCACGGGCGGCATACACCGCAGCGCTGTAACCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/901808‑901659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcaTGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTAT  >  NC_002947/901724‑901817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.