| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1201733 = | 52 (1.060) | 3 (0.060) | 3/250 | NT | 5.6% | coding (137/591 nt) | xcpW | type II secretion pathway protein XcpW |
| ? | NC_002947 | 1201760 = | 52 (1.110) | coding (164/591 nt) | xcpW | type II secretion pathway protein XcpW | |||||
GTGCTGGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCCAGTCCAGCCAACGGCTGGCCAGCGGCAGACGCTGGTCGTAGACACGGCGCAGCACCGGGCTGTCGAAGCGCCGCTCCAGGGCCAGGCAAAAGTCCAGCACCGAGATTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1201883‑1201733‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgccTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGG > NC_002947/1201760‑1201907 GTGCTGGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCCAGTCCAGCCAACGGCTGGCCAGCGGCAGACGCTGGTCGTAGACACGGCGCAGCACCGGGCTGTCGAAGCGCCGCTCCAGGGCCAGGCAAAAGTCCAGCACCGAGATTTG < 8:60462/149‑1 ACAGCAACTGGTTGCTGGCGGGCTGCCAGTCCAGCCAACGGCTGGCCAGCGGCAGACGCTGGTCGTAGACACGGCGCAGCACCGGGCTGTCGAAGCGCCGCTCCAGGGCCAGGCAAAAGTCCAGCACCGAGATTTGC > 1:240755/1‑137 ACAGCAACTGGTTGCTGGCGGGCTGCCAGTCCAGCCAACGGCTGGCCAGCGGCAGACGCTGGTCGTAGACACGGCGCAGCACCGGGCTGTCGAAGCGCCGCTCCAGGGCCAGGCAAAAGTCCAGCACCGAGATTTGC < 2:240755/137‑1 CTCCAGGGCCAGGCAAAAGTCCAGCACCGAGATTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGT > 2:40697/1‑149 CAGGCAAAAGTCCAGCACCGAGATTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTG > 3:122262/1‑109 CAGGCAAAAGTCCAGCACCGAGATTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTG < 4:122262/109‑1 GCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCCGCAACCAGTTGCTGTGGGTAGACAGCACCGGCCTGCCGGCAGCCGCAGGT > 6:84743/1‑149 GCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCG < 3:23362/137‑1 GCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCG > 4:23362/1‑137 CCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGT < 2:305018/148‑1 CTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGG < 1:198675/149‑1 CTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGG > 7:222617/1‑149 GTGCTGGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCCAGTCCAGCCAACGGCTGGCCAGCGGCAGACGCTGGTCGTAGACACGGCGCAGCACCGGGCTGTCGAAGCGCCGCTCCAGGGCCAGGCAAAAGTCCAGCACCGAGATTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1201883‑1201733‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgccTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGG > NC_002947/1201760‑1201907 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |