New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2442827 =	49 (1.000)	3 (0.060)	3/252	NT	5.5%	coding (1965/2610 nt)	topA	DNA topoisomerase I
	?	NC_002947	2442878 =	56 (1.190)					coding (2016/2610 nt)	topA	DNA topoisomerase I

CCTTGATGCGGTAGTTGCCTTCTTCGATCTCGTAACCGACACAATCCGGGTTGTTACCGCAGATGTGCAGCTTGTGTTTCTCGTCCAGCAGGTAGGCGTCCATCGCCGTGGCGCAGATCGGGCAACGGTGCTTGCCCAGCAACACGCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2442978‑2442827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatGGACGCCTACCTGCTGGACGAGAAACACAAGCTGCACATCTGCGGTAACAACCCGGATTGTGTCGGTTACGAGATCGAAGAAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATG  >  NC_002947/2442878‑2443025                                                                                                                                                                                                                                                                                                              CCTTGATGCGGTAGTTGCCTTCTTCGATCTCGTAACCGACACAATCCGGGTTGTTACCGCAGATGTGCAGCTTGTGTTTCTCGTCCAGCAGGTAGGCGTCCATCGCCGTGGCGCAGATCGGGCAACGGTGCTTGCCCAGCAACACGCGC                                                                                                                                                         <  1:41745/149‑1                                                                                                  GTCCATCGCCGTGGCGCAGATCGGGCAACGGTGCTTGCCCAGCAACACGCGCGATGGACGCCTACCTGCTGGACGAGAAACACAAGCTGCACATCTGCGGTAACAACCCGGATTGTGTCGGTTACGAGAT                                                                           <  5:178775/130‑1                                                                                                  GTCCATCGCCGTGGCGCAGATCGGGCAACGGTGCTTGCCCAGCAACACGCGCGATGGACGCCTACCTGCTGGACGAGAAACACAAGCTGCACATCTGCGGTAACAACCCGGATTGTGTCGGTTACGAGAT                                                                           >  6:178775/1‑130                                                                                                      ATCGCCGTGGCGCAGATCGGGCAACGGTGCTTGCCCAGCAACACGCGCGATGGACGCCTACCTGCTGGACGAGAAACACAAGCTGCACATCTGCGGTAACAACCCGGATTGTGTCGGTTACGAGATCGAAGAAGGCAACTACCGCATC                                                     >  1:212286/1‑148                                                                                                                                                     CGATGGACGCCTACCTGCTGGACGAGAAACACAAGCTGCACATCTGCGGTAACAACCCGGATTGTGTCGGTTACGAGATCGAAGAAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGC              >  3:22609/1‑140                                                                                                                                                     CGATGGACGCCTACCTGCTGGACGAGAAACACAAGCTGCACATCTGCGGTAACAACCCGGATTGTGTCGGTTACGAGATCGAAGAAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGC              <  4:22609/140‑1                                                                                                                                                       ATGGACCCCTACCTGCTGGACGAGAAACACAAGCTGCACCTCTGCGGTAACAACCCGGATTGTGTCGGTTACGAGATCGAAGAAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGAT   <  3:189387/149‑1                                                                                                                                                        TGGACGCCTACCTGCTGGACGAGAAACACAAGCTGCACATCTGCGGTAACAACCCGGATTGTGTCGGTTACGAGATCGAAGAAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATG  <  5:190097/149‑1                                                                                                                                                                                                                                                                                                              CCTTGATGCGGTAGTTGCCTTCTTCGATCTCGTAACCGACACAATCCGGGTTGTTACCGCAGATGTGCAGCTTGTGTTTCTCGTCCAGCAGGTAGGCGTCCATCGCCGTGGCGCAGATCGGGCAACGGTGCTTGCCCAGCAACACGCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2442978‑2442827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatGGACGCCTACCTGCTGGACGAGAAACACAAGCTGCACATCTGCGGTAACAACCCGGATTGTGTCGGTTACGAGATCGAAGAAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATG  >  NC_002947/2442878‑2443025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.