| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_002947 | 3,731,403 | Δ61,130 bp | 100% | [PP_3298]–[PP_3354] | 56 genes [PP_3298], PP_3299, PP_3300, PP_3301, PP_3302, PP_3303, PP_3304, PP_3305, PP_3306, PP_3307, paoA, paoB, paoC, kefB‑II, PP_3312, PP_3313, PP_3314, PP_3315, PP_3316, PP_3317, PP_3318, PP_3319, PP_3320, PP_3321, hemBB, PP_3323, folEB, PP_3325, PP_3326, PP_3328, PP_5599, PP_3329, PP_5600, PP_3330, PP_3331, PP_3332, PP_3333, PP_5743, PP_3335, PP_3336, PP_3337, PP_3338, PP_3339, PP_3340, nikR, nikA, nikB, nikC, nikD, nikE, PP_3348, mhpT, PP_3350, atsA, PP_3353, [PP_3354] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3731403 | 3792532 | 61130 | 35 [0] | [0] 35 | [PP_3298]–[PP_3354] | [PP_3298],PP_3299,PP_3300,PP_3301,PP_3302,PP_3303,PP_3304,PP_3305,PP_3306,PP_3307,paoA,paoB,paoC,kefB‑II,PP_3312,PP_3313,PP_3314,PP_3315,PP_3316,PP_3317,PP_3318,PP_3319,PP_3320,PP_3321,hemBB,PP_3323,folEB,PP_3325,PP_3326,PP_3328,PP_5599,PP_3329,PP_5600,PP_3330,PP_3331,PP_3332,PP_3333,PP_5743,PP_3335,PP_3336,PP_3337,PP_3338,PP_3339,PP_3340,nikR,nikA,nikB,nikC,nikD,nikE,PP_3348,mhpT,PP_3350,atsA,PP_3353,[PP_3354] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3731402 | 0 (0.000) | 32 (0.650) | 30/262 | NT | 100% | coding (300/504 nt) | PP_3298 | CinA domain‑containing protein |
| ? | NC_002947 | 3792533 = | 0 (0.000) | coding (785/1755 nt) | PP_3354 | acyl‑CoA dehydrogenase | |||||
CCTCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3731263‑3731402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGCCAACACCAGGT > NC_002947/3792533‑3792680 CCTCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGAGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTG > 8:215400/1‑149 CTCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGC < 6:239058/149‑1 GCCAAGAACCGTCTGATAGGTCTAAGCGCGGAAACCATAGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCATAGTGGCGTTGAAGGAAAAAGATGCCAATGTCGTAATCGACAATACAGGTGTGGCCCTGCCCCG > 8:195561/1‑149 TCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCT > 8:6554/1‑149 GCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTAT > 6:92716/1‑149 GAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCTGGCCGTCGCA > 7:41386/1‑149 ATCGACCGGTAGGTGCTGACCAGCGAACCATTCGCATGGGAGATGGCCCTAGGGGAGTTGAAGGATAGAGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAG < 7:195561/149‑1 TCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGT < 5:92716/149‑1 TACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCG > 4:99453/1‑149 CGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCT < 4:302570/149‑1 GGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGG > 3:182874/1‑149 ACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATC > 3:111816/1‑149 CAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCAT > 2:179429/1‑149 CAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCA < 6:75169/144‑1 CAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCA > 5:75169/1‑144 GCATGGGAGATTGCCCTAGGGGCGTTGAAGGACAGCGATGCCTATGTCGTTATCGCAACTACAGGTGTGGCGCTGCGCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGG < 8:243641/149‑1 CATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGC < 3:99453/149‑1 GGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCTGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCA < 6:172103/149‑1 GGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGG < 2:21284/130‑1 GGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCAATCCTCCAGCCATTTCGG > 1:21284/1‑130 ggTGAAGGACAGCGATCCCAATGTCGATATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGC < 3:199689/147‑1 TTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCG < 4:182874/149‑1 TTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCC > 7:266927/1‑63 TTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCC < 8:266927/63‑1 GACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCC < 5:106289/149‑1 GACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCC > 4:97136/1‑149 GCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGC < 2:287335/122‑1 GCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGC > 1:287335/1‑122 CCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGC > 2:101399/1‑148 GCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGC < 3:97136/149‑1 AACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGCC > 6:148525/1‑148 CTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGCCAAC > 1:279781/1‑149 CAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGCCAACACC < 7:6554/149‑1 GTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGCCAACACCAGG > 8:18758/1‑149 TGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGCCAACACCAGGT > 5:296275/1‑149 CCTCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3731263‑3731402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGCCAACACCAGGT > NC_002947/3792533‑3792680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |