New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3874651	42 (0.860)	3 (0.070)	3/244	NT	6.4%	coding (257/594 nt)	ltg	lytic transglycosylase
	?	NC_002947	= 3874720	49 (1.080)					coding (188/594 nt)	ltg	lytic transglycosylase

TTGAGGTAGCGCGCCCCGCCCTGCACATTGTCTTCCGGGTCCAGGCGGTCTTGCACCCCCATCTCGCGGGCTGTGTCTGGCATCAGTTGCATCAACCCCACTGCACCCGCCCGCGAACGGGCTTTGGGGTTGTAGCCGGACTCGGCCTTGATCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3874495‑3874651 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcaccgGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGATGCAACTGATG  <  NC_002947/3874720‑3874575                                                                                                                                                                                                                                                                                                                 TTGAGGTAGCGCGCCCCGCCCTGCACATTGTCTTCCGGGTCCAGGCGGTCTTGCACCCCCATCTCGCGGGCTGTGTCTGGCATCAGTTGCATCAACCCCACTGCCCCCGCCCGCGAACGGGCTTTGGGGTTGTAGCCGGACTCGGCCTT                                                                                                                                                            >  5:211195/1‑149      GTAGCGCGCCCCGCCCTGCACATTGTCTTCCGGGTCCAGGCGGTCTTGCACCCCCATCTCGCGGGCTGTGTCTGGCATCAGTTGCATCAACCCCACTGCACCCGCCCGCGAACGGGCTTTGGGGTTGTAGCCGGACTCGGCCTTGATCA                                                                                                                                                       >  4:123393/1‑149         GCGCGCCCCGCCCTGCACCTTGTCTTCCGGGTCCAGGCGGTCTTGCACCCCCATCTCGCGGGCTGTGTCTGGCATCAGTTGCATCAACCCCACTGCACCCGCCCGCGAACGGGCTTTGGGGTTGTAGCCGGACTCGGCCTTGATCACCG                                                                                                                                                    >  6:17172/1‑149                                                                            TCTGGCATCAGTTGCATCAACCCCACTGCACCCGCCCGCGAACGGGCTTTGGGGTTGTAGCCGGACTCGGCCTTGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCA                                                                                 >  4:187524/1‑149                                                                                   TCAGTTGCATCAACCCCACTGCACCCGCCCGCGAACGGGCTTTGGGGTTGTAGCCGGACTCGGCCTTGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTG                                                                          <  3:187524/149‑1                                                                                         GCATCAACCCCACTGCACCCGCCCGCGAACGGGCTTTGGGGTTGTAGCCGGACTCGGCCTTGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAA                                                                     <  3:123393/148‑1                                                                                                                                                     TGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGATGCA         <  2:200106/148‑1                                                                                                                                                      GATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGATGCAAC       >  2:152674/1‑149                                                                                                                                                        TCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGT                >  7:52437/1‑138                                                                                                                                                        TCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGT                <  8:52437/138‑1                                                                                                                                                         CACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGATGCAACTGA    >  2:223166/1‑149                                                                                                                                                          ACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGATGCAACTGA    <  2:11456/148‑1                                                                                                                                                           CCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGATGCAACTGATG  >  2:73568/1‑149                                                                                                                                                                                                                                                                                                                 TTGAGGTAGCGCGCCCCGCCCTGCACATTGTCTTCCGGGTCCAGGCGGTCTTGCACCCCCATCTCGCGGGCTGTGTCTGGCATCAGTTGCATCAACCCCACTGCACCCGCCCGCGAACGGGCTTTGGGGTTGTAGCCGGACTCGGCCTTGATCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3874495‑3874651 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcaccgGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGATGCAACTGATG  <  NC_002947/3874720‑3874575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.