| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4511671 = | 60 (1.230) | 5 (0.110) | 4/252 | NT | 8.6% | coding (118/1326 nt) | rarA | DNA‑dependent ATPase |
| ? | NC_002947 | 4511692 = | 48 (1.020) | coding (97/1326 nt) | rarA | DNA‑dependent ATPase | |||||
CGCGGACGTGATCAAGGAGTAACCAGAGCTCGCCATGGACCTGTTTCGAAGCGAACCCGTCGCCCAGCCCCTGGCCGCCCGTCTGCGCCCGTCCAGCCTGGATGAGTACGTCGGCCAGGAGCACCTGCTGGCGCGCGGTAAACCGCTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4511822‑4511671‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGCGACGGGTTCGCTTCGAAACAGGTCCATGGCGAGCTCTGGTTACTCCTTGATCACGTCCGCGCCCTTGGGGATGTCGAA > NC_002947/4511692‑4511839 CGCGGACGTGATCAAGGAGTAACCAGAGCTCGCCATGGACCTGTTTCGAAGCGAACCCGTCGCCCAGCCCCTGGCCGCCCGTCTGCGCCCGTCCAGCCTGGATGAGTACGTCGGCCAGGAGCACCTGCTGGCGCGCGGTAAACCGCTGC < 5:25314/149‑1 ACGTGATCAAGGAGTAACCAGAGCTCGCCATGGACCTGTTTCGAAGCGAACCCGTCGCCCAGCCCCTGGCCGCCCGTCTGCGCCCGTCCAGCCTGGATGAGTACGTCGGCCAGGAGCACCTGCTGGCGCGCGGTAAACCGCTGCGCG > 8:43660/1‑147 CTGCTGGCGCGCGGTAAACCGCTGCGCGCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGCGACGGG > 7:237397/1‑104 CTGCTGGCGCGCGGTAAACCGCTGCGCGCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGCGACGGG < 8:237397/104‑1 CTGCTGGCGCGCGGTAAACCGCT‑‑GCGCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGCGACGGGTTCGCTTCGAAACAGGTCCATGGCGAGCTCTGGTTACTCCTTGATCA > 4:235995/1‑149 TGGCGCGCGGTAAACCGCTGCGCGCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGC < 5:305417/94‑1 TGGCGCGCGGTAAACCGCTGCGCGCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGC > 6:305417/1‑94 CGCGCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGCGACGGGTTCGCTTCGAAACAGGTCCATGGCGAGCTCTGGTTACTCCTTGATCACGTCCGCGCCCTTGGGGATGTC < 7:239153/149‑1 CGCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGCGACGGGTTCGCTTCGAAACAGGTCCATGGCGAGCTCTGGTTACTCCTTGATCACGTCCGCGCCCTTGGGGATGTCGA < 6:25314/149‑1 GCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGCGACGGGTTCGCTTCGAAACAGGTCCATGGCGAGCTCTGGTTACTCCTTGATCACGTCCGCGCCCTTGGGGATGTCGAA < 1:51509/149‑1 CGCGGACGTGATCAAGGAGTAACCAGAGCTCGCCATGGACCTGTTTCGAAGCGAACCCGTCGCCCAGCCCCTGGCCGCCCGTCTGCGCCCGTCCAGCCTGGATGAGTACGTCGGCCAGGAGCACCTGCTGGCGCGCGGTAAACCGCTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4511822‑4511671‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgCCAGCAGGTGCTCCTGGCCGACGTACTCATCCAGGCTGGACGGGCGCAGACGGGCGGCCAGGGGCTGGGCGACGGGTTCGCTTCGAAACAGGTCCATGGCGAGCTCTGGTTACTCCTTGATCACGTCCGCGCCCTTGGGGATGTCGAA > NC_002947/4511692‑4511839 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |