New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4681743 =	59 (1.210)	4 (0.090)	4/252	NT	6.9%	coding (33/1431 nt)	mltD	membrane‑bound lytic murein transglycosylase D
	?	NC_002947	4681829 =	52 (1.110)					coding (119/1431 nt)	mltD	membrane‑bound lytic murein transglycosylase D

CCAGCAGCGGGGAAGGTTTGTGCTTGATCCGTGCCTGGTAGTTGTGCGCGCGAACGCTATCGGATTCGTCGAGCTGACGGGTGCTCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4681894‑4681743 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCATGCGCCAGGGCTTCGCCCTGCAGGACAGTATCGATGTC  >  NC_002947/4681829‑4681974                                                                                                                                                                                                                                                                                                            CCAGCAGCGGGGAAGGTTTGTGCTTGATCCGTGCCTGGTAGTTGTGCGCGCGAACGCTATCGGATTCGTCGAGCTGACGGGTGCTCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGC                                                                                                                                                        >  3:138619/1‑148   AGCAGCGGGGAAGGTTTGTGCTTGATCCGTGCCTGGTAGTTGTGCGCGCGAACGCTATCGGATTCGTCGAGCTGACGGGTGCTCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGAC                                                                                                                                                     >  5:168631/1‑149                                        AGTTGTGCGCGCGAACGCTATCGGACTCGTCGAGCTGACGGGTGCTCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGAC                                                                                                                                                     >  1:193153/1‑112                                        AGTTGTGCGCGCGAACGCTATCGGACTCGTCGAGCTGACGGGTGCTCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGAC                                                                                                                                                     <  2:193153/112‑1                                                               GATTCGTCGAGCTGACGGGTGCTCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCG                                                                                         >  8:232325/1‑149                                                                ATTCGTCGAGCTGACGGGTGCTCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGC                                                                                        >  1:137225/1‑149                                                                     TCGAGCTGACGGGTGCTCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTG                                                                                   >  8:21443/1‑149                                                                                                       TGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCT                                                 <  2:137225/149‑1                                                                                                                                                   GCGACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCATGCGCCAGGGCTTCGCCCTGCAGGACAGTATCGAT     <  7:21443/149‑1                                                                                                                                                     GACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCATGCGCCAGGGCTTCGCCCTGCAGGACAGTATCGATGT   >  6:111948/1‑149                                                                                                                                                     GACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCATGCGCCAGGGCTTCGCCCTGCAGGACAGTATCGAT     <  2:11894/147‑1                                                                                                                                                     GACGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCATGCGCCAGGGCTTCGCCCTGCAGGACAGTATCGAT     <  4:14617/147‑1                                                                                                                                                       CGAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCATGCGCCAGGGCTTCGCCCTGCAGGACAGTATCGATGTC  <  8:69744/148‑1                                                                                                                                                                                                                                                                                                            CCAGCAGCGGGGAAGGTTTGTGCTTGATCCGTGCCTGGTAGTTGTGCGCGCGAACGCTATCGGATTCGTCGAGCTGACGGGTGCTCTGGCAGCCCACCAAGGTGGCTGCCAGGGCCAGCGCACTGATTTGGGCCAGGCGCGTCAGGGCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4681894‑4681743 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgAATCCGATAGCGTTCGCGCGCACAACTACCAGGCACGGATCAAGCACAAACCTTCCCCGCTGCTGGTCAAGCCGGCCGAACAGGCGCCGCAGGATGTCTGGGAGCGCATGCGCCAGGGCTTCGCCCTGCAGGACAGTATCGATGTC  >  NC_002947/4681829‑4681974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.