New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5342241 =	59 (1.210)	4 (0.090)	4/252	NT	7.6%	coding (551/864 nt)	panC	pantothenate synthetase
	?	NC_002947	5342276 =	40 (0.850)					coding (586/864 nt)	panC	pantothenate synthetase

TCAGTTGCGCCTGGCCTTCAGCGACCAGCGCGGCAAAATCCCGCTGGCCACGGCCGATGCCCGCTGCAATGTGCTGCAGTGTGCGGTACAGCGCTGGCGCAGCTGTACGCTGCTCTGGCGTGAGGTAGCCATTGCGCGACGACAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5342390‑5342241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaGAGCAGCGTACAGCTGCGCCAGCGCTGTACCGCACACTGCAGCACATTGCAGCGGGCATCGGCCGTGGCCAGCGGGATTTTGCCGCGCTGGTCGCTGAAGGCCAGGCGCAACTGAGCGCAGCGGGTTTCCGCCCGGATTACCTGGAAG  >  NC_002947/5342276‑5342423                                                                                                                                                                                                                                                                                                            TCAGTTGCGCCTGGCCTTCAGCGACCAGCGCGGCAAAATCCCGCTGGCCACGGCCGATGCCCGCTGCAATGTGCTGCAGTGTGCGGTACAGCGCTGGCGCAGCTGTACGCTGCTCTGGCGTGAGGTAGCCATTGCGCGACGACAGCGC                                                                                                                                                        >  1:296073/1‑148                                                                                                              cttCTCTGGCGTGAGGTAGCCATTGCGCGACGACAGCGCCAGAGCAGCGTACAGCTGCGCCAGCGCTGTACCGCACACTGCAGCACATTGCAGCGGGCATCGGCCGTGGCCAGCGGGATTTTGCCGCGCTGGTCGCTGAAG                                                  <  6:100851/138‑1                                                                                                              CTGCTCTGGCGTGAGGTAGCCATTGCGAGACGACAGCGCCAGAGAAGCGTACAGCTGCGCCAGCGCTGTACCGCACAATGCAGCACATTGCAGCGGGCATCGGCCGTGGCCAGCGGGATTTTGCCGCGCTGGTCGCTGAAG                                                  >  5:100851/1‑141                                                                                                               TGCTCTGGCGTGAGGTAGCCATTGCGCGACGACAGCGCCAGAGCAGCGTACAGCTGCGCCAGCGCTGTACCGCACACTGCAGCACATTGCAGCGGGCATCGGCCGTGGCCAGCGGGATTTTGCCGCGCTGGTCGCTGAAGGCCAGGCG                                          >  5:205431/1‑148                                                                                                                                GCCATTGCGCGACGACAGCGCCAGAGCAGCGTACAGCTGCGCCAGCGCTGTACCGCACACTGCAGCACATTGCAGCGGGCATCGGCCGTGGCCAGCGGGATTTTGCCGCGCTGGTCGCTGAAGGCCAGGCGCAACTGAGCGCAGCGGGT                        <  6:205431/149‑1                                                                                                                                                   GCCAGAGCAGCGTACAGCTGCTCCATCGCTGTACCGCACACTGCAGCACATTGCAGCGGGCATCGGCCGTGGCCAGCGGGATTTTGCCGCGCTGGTCGCTGAAGGCCAGGCGCAACTGAGCGCAGCGGGTTTCCGCCCGGATTACCTGG     <  8:285636/149‑1                                                                                                                                                   GCCAGAGCAGCGTACAGCTGCGCCAGCGCTGTACCGCACACTGCAGCACATTGCAGCGGGCATCGGCCGTGGCCAGCGGGATTTTGCCGCGCTGGTCGCTGAAGGCCAGGCGCAACTGAGCGCAGCGGGTTTCCGCCCGGATTACCTG      >  4:15596/1‑148                                                                                                                                                      AGAGCAGCGTACAGCTGCGCCAGCGCTGTACCGCACACTGCAGCACATTGCAGCGGGCATCGGCCGTGGCCAGCGGGATTTTGCCGCGCTGGTCGCTGAAGGCCAGGCGCAACTGAGCGCAGCGGGTTTCCGCCCGGATTACCTGGAAG  >  5:158532/1‑149                                                                                                                                                                                                                                                                                                            TCAGTTGCGCCTGGCCTTCAGCGACCAGCGCGGCAAAATCCCGCTGGCCACGGCCGATGCCCGCTGCAATGTGCTGCAGTGTGCGGTACAGCGCTGGCGCAGCTGTACGCTGCTCTGGCGTGAGGTAGCCATTGCGCGACGACAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5342390‑5342241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaGAGCAGCGTACAGCTGCGCCAGCGCTGTACCGCACACTGCAGCACATTGCAGCGGGCATCGGCCGTGGCCAGCGGGATTTTGCCGCGCTGGTCGCTGAAGGCCAGGCGCAACTGAGCGCAGCGGGTTTCCGCCCGGATTACCTGGAAG  >  NC_002947/5342276‑5342423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.