New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5460560 =	55 (1.120)	3 (0.060)	3/254	NT	5.5%	coding (979/1038 nt)	holA	DNA polymerase III subunit delta
	?	NC_002947	5460605 =	50 (1.050)					coding (1024/1038 nt)	holA	DNA polymerase III subunit delta

TACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5460711‑5460560 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCTCCCTCCCGAGTAACTGCGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCG  >  NC_002947/5460605‑5460660                                                                                                                                                                                                                  tagGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAG                                                             <  6:120250/146‑1                                                                                                            GGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCCTCCCTCCCGAGTAACTGCGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCG  <  3:97175/101‑1                                                                                                             GCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCCTCCCTCCCGAGTAACTGCGGCCGTCGTAGGAGCGG                      <  1:114347/80‑1                                                                                                             GCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCCTCCCTCCCGAGTAACTGCGGCCGTCGTAGGAGCGG                      >  2:114347/1‑80                                                                                                                                                                                                                  TACGGTGGCGGCGGCAACGGTGAACGGTGGGTGGAGATTGATTAGCAGGTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5460711‑5460560 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCTCCCTCCCGAGTAACTGCGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCG  >  NC_002947/5460605‑5460660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.