New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5475848	50 (1.020)	6 (0.130)	5/254	NT	10.2%	coding (78/1317 nt)	PP_4813	PAP2 family protein/DedA family protein
	?	NC_002947	= 5475892	57 (1.200)					coding (122/1317 nt)	PP_4813	PAP2 family protein/DedA family protein

CACACGGAACCCGTTACGTCGCGGCCAAGTCGAAGGCCGTGATTTCTTCATTCTCGAACAAGGAAGCTGAACATGGGCCAATGGCTCGACAGCCTGACCGGCTGGCTCAGCGCCAACCCGCAGTGGCTTGGCCTGGCGATTTTCCTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5475699‑5475848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgCCCGGCACGATAATGCCGGCGATGGCCAGGCATTCGATGCAGGCCACCAGGAAAATCGCCAGGCCAAGCCACTGCGGGTTGGCGCTGAGCCAGCCGGTCAGGCTGTCGAGCCATTGGCCCATGTTCAGCTTCCTTGTTCGAGAATG  <  NC_002947/5475892‑5475747                                                                                                                                                                                                                                                                                                          CACACGGAACCCGTTACGTCGCGGCCAAGTCGAAGGCCGTGATTTCTTCATTCTCGAACAAGGAAGCTGAACATGGGCCAATGGCTCGACAGCCTGACCGGCTGGCTCAGCGCCAACCCGCAGTGGCTTGGCCTGGCGATTTTCCTGGT                                                                                                                                                     >  5:215791/1‑149                                 AAGGCCGTGATTTCTTCATTCTCGAACAAGGAAGCTGAACATGGGCCAATGGCTCGACAGCCTGACCGGCTGGCTCAGCGCCAACCCGCAGTGGCTTGGCCTGGCGATTTTCCTGGTGCCCGGCACGATAATGCCGGCGATGGCCAGG                                                                                                                      >  3:257939/1‑148                                           TTTCTTCATTCTCGAACAAGGAAGCTGAACATGGGCCAATGGCTCGACAGCCTGACCGGCTGGCTCAGCGCCAACCCGCAGTGGCTTGGCCTGGCGATTTTCCTGGTGCCCGGCACGATAATGCCGGCGATGGCCAGGCATTCGATG                                                                                                             >  4:75667/1‑147                                                   TTCTCGAACAAGGAAGCTGAACATGGGCCAATGGCTCGACAGCCTGACCGGCTGGCTCAGCGCCAACCCGCAGTGGCTTGGCCTGGCGATTTTCCTGGTGCCCGGCACGATAATGCCGGCGATGGCCAGGCATTCGATGCAGGCCACCA                                                                                                   <  4:257939/149‑1                                                     CTCGAACAAGGAAGCTGAACATGGGCCAATGGCTCGACAGCCTGACCGGCTGGCTCAGCGCCAACCCGCAGTGGCTTGGCCTGGCGATTTTCCTGGTGCCCGGCACGATAATGCCGGCGATGGCCAGGCATTCGATGCAGGCCACCAG                                                                                                  <  3:75667/148‑1                                                          tCAAGGAAGCTGTTCATGGGCCAATGGCTCGACAGCGTGACCGGCTGGCTCAGCGCCAACCCGCAGTGGCTTGGCCTGGCGATTTTCCTGGTGCCCGGCACGATAATGCCGGCGATGGCCAGGCATTCGATGCAGGCCACCA                                                                                                   <  8:186126/141‑1                                                          ACAAGGAAGCTGAACATGGGCCAATGGCTCGACAGCCTGACCGGCTGGCTCAGCGCCAACCCGCAGTGGCTAGGCCTGGCGATTTTCCTGCTGCCCGCCACGATAATCCCGGCGATGGCCAGGCATTCGATGCAGGCCACCA                                                                                                   >  7:186126/1‑142                                                                                                                                                   GGTGCCCGGCACGATAATGCCGGCGATGGCCAGGCATTCGATGCAGGCCACCAGGAAAATCGCCAGGCCAAGCCACTGCGGGTTGGCGCTGAGCCAGCCGGTCA                                                >  7:293005/1‑104                                                                                                                                                   GGTGCCCGGCACGATAATGCCGGCGATGGCCAGGCATTCGATGCAGGCCACCAGGAAAATCGCCAGGCCAAGCCACTGCGGGTTGGCGCTGAGCCAGCCGGTCA                                                <  8:293005/104‑1                                                                                                                                                    GTGCCCGGCACGATAATGCCGGCGATGGCCAGGCATTCGATGCAGGCCACCAGGAAAATCGCCAGGCCAAGCCACTGCGGGTTGGCGCTGAGCCAGGCGGTCAGGCTGTCGAGCCATTGGCCCATGTTCAGCTTCCTTGTTCGAGAATG  <  2:202010/149‑1                                                                                                                                                                                                                                                                                                          CACACGGAACCCGTTACGTCGCGGCCAAGTCGAAGGCCGTGATTTCTTCATTCTCGAACAAGGAAGCTGAACATGGGCCAATGGCTCGACAGCCTGACCGGCTGGCTCAGCGCCAACCCGCAGTGGCTTGGCCTGGCGATTTTCCTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5475699‑5475848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgCCCGGCACGATAATGCCGGCGATGGCCAGGCATTCGATGCAGGCCACCAGGAAAATCGCCAGGCCAAGCCACTGCGGGTTGGCGCTGAGCCAGCCGGTCAGGCTGTCGAGCCATTGGCCCATGTTCAGCTTCCTTGTTCGAGAATG  <  NC_002947/5475892‑5475747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.