| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5510345 = | 52 (1.060) | 4 (0.090) | 4/252 | NT | 7.7% | coding (544/1488 nt) | urtB | urea ABC transporter permease |
| ? | NC_002947 | 5510420 = | 46 (0.980) | coding (619/1488 nt) | urtB | urea ABC transporter permease | |||||
ATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCAGCGCTGCCAGCAGCAGGACCGAACCCAGCGACAGGCCGCTGAAGGCCTGGCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5510496‑5510345‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGA > NC_002947/5510420‑5510508 ATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCAGCGCTGCCAGCAGCAGGACCGAACCCAGCGACAGGCCGCTGAAGGCCTGGCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGC < 2:177001/149‑1ATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCAGCGCTGCCAGCAGCAGGACCGAACCCAGCGACAGGCCGCTGAAGGCCTGGCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGC < 5:190981/149‑1 GAGCAGGCCGAAGGTGATCGCAAGGCCCAGCGCTGCCAGCAGCAGGACCGAACCCAGCGACAGGCCGCTGAAGGCCTGGCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGCGG < 1:306214/137‑1 GAGCAGGCCGAAGGTGATCGCAAGGCCCAGCGCTGCCAGCAGCAGGACCGAACCCAGCGACAGGCCGCTGAAGGCCTGGCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGCGG > 2:306214/1‑137 GACAGGCCGCTGAAGGCCTGGCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTG < 1:202006/123‑1 GACAGGCCGCTGAAGGCCTGGCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTG > 2:202006/1‑123 GGCCGCTGAAGGCCTGGCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATC > 5:249124/1‑148 GCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGCGGCCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGA < 6:249124/149‑1 ATGTTGATCACCCCGAGCAGGCCGAAGGTGATCGCAAGGCCCAGCGCTGCCAGCAGCAGGACCGAACCCAGCGACAGGCCGCTGAAGGCCTGGCCGAGCAGTTCGCCTAGCAGCAGTTTGCGCTTGACCTGGGCCAGGCTCGTTTCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5510496‑5510345‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcCTGTCGCTGGGTTCGGTCCTGCTGCTGGCAGCGCTGGGCCTTGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCATGGCGA > NC_002947/5510420‑5510508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |