| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5581307 = | 69 (1.410) | 3 (0.060) | 3/248 | NT | 4.8% | coding (342/1458 nt) | PP_4910 | hypothetical protein |
| ? | NC_002947 | 5581354 = | 54 (1.170) | coding (389/1458 nt) | PP_4910 | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGGCTGATCAGCATCGGCTGCTGGAACTGGCTCATGTCCAGGCTTATGCGCAGCTGCCCGGCCGTCACGTCCTGGAACGTGATTTTGGTCTGGTACAGGCCTTCGGCCTCGCCCAGCAGGCTATTGCGCGGGCGCTGGCCGGCTTCGGCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5581460‑5581307‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaggCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCTGATCAGCCTGCAGAGCATGGGCATTCTGGCCGCCATCCTGCTTACCCTGGC > NC_002947/5581354‑5581501 CAGGCTGATCAGCATCGGCTGCTGGAACTGGCTCATGTCCAGGCTTATGCGCAGCTGCCGGGCCGTCACGTCCTTGAACGTGATTTTGGTCTGGTACAGGCCTTCGGCCTCGCCCAGCAGGCTATTGCGCGGGCGCTGGCCGGCTTCG < 8:60064/148‑1 TGATCAGCATCGGCTGCTGGAACTGGCTCATGTCCAGGCTTATGCGCAGCTGCCCGGCCGTCACGTCCTGGAACGTGATTTTGGTCTGGTACAGGCCTTCGGCCTCGCCCAGCAGGCTATTGCGCGGGCGCTGGCCGGCTTCGGCGA > 1:275164/1‑147 TGATCAGCATCGGCTGCTGGAACTGGCTCATGTCCAGGCTTATGCGCAGCTGCCCGGCCGTCACGTCCTGGAACGTGATTTTGGTCTGGTACAGGCCTTCGGCCTCGCCCAGCAGGCTATTGCGCGGGCGCTGGCCGGCTTCGGCGA < 2:275164/147‑1 TTCGGCCTCGCCCAGCAGGCTATTGCGCGGGCGCTGGCCGGCTTCGGCGAGGCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCT > 7:131567/1‑149 CCTCGCCCAGCAGGCTATTGCGCGGGCGCTGGCCGGCTTCGGCGAGGCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCTGATCA > 6:161428/1‑149 GCCCAGCAGGCTATTGCGCGGGCGCTGGCCGGCTTCGGCGAGGCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCTGATCAGCC < 8:131567/148‑1 CGAGGCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCTGATCAGCCTGCAGAGCATGGGCATTCTGGCCGCCATCCTGCTTACCC > 6:111002/1‑149 CGAGGCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCTGATCAGCCTGCAGAGCATGGGCATTCTGGCCGCCATCCTGCTTA < 3:132174/146‑1 CGAGGCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCTGATCAGCCTGCAGAGCATGGGCATTCTGGCCGCCATCCTGCTTA > 4:132174/1‑146 AGGCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCTGATCAGCCTGCAGAGCATGGGCATTCTGGCCGCCATCCTGCTTACCCTG < 7:19999/149‑1 GCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCTGATCAGCCTGCAGAGCATGGGCATTCTGGCCGCCATCCTGCTTACCCTGGC < 2:215886/149‑1 CAGGCTGATCAGCATCGGCTGCTGGAACTGGCTCATGTCCAGGCTTATGCGCAGCTGCCCGGCCGTCACGTCCTGGAACGTGATTTTGGTCTGGTACAGGCCTTCGGCCTCGCCCAGCAGGCTATTGCGCGGGCGCTGGCCGGCTTCGGCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5581460‑5581307‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaggCCGAAGGCCTGTACCAGACCAAAATCACGTTCCAGGACGTGACGGCCGGGCAGCTGCGCATAAGCCTGGACATGAGCCAGTTCCAGCAGCCGATGCTGATCAGCCTGCAGAGCATGGGCATTCTGGCCGCCATCCTGCTTACCCTGGC > NC_002947/5581354‑5581501 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |