New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5786495	42 (0.860)	6 (0.150)	6/214	NT	14.8%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5786532	35 (0.880)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin

GGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5786325‑5786495 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCGGG  <  NC_002947/5786532‑5786386                                                                                                                                                                                                                                                                                                                                GGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTG                                                                                                                                                                           <  6:83656/149‑1  GGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGT                                                                                                                                                                          <  7:28018/149‑1   GGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTG                                                                                                                                                                         <  2:16383/149‑1    GGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGG                                                                                                                                                                        <  4:31248/149‑1     GACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGG                                                                                                                                                                        >  5:311824/1‑148          CAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGC                                                                                                                                                                    <  5:258956/147‑1                 GTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCC                                                                                                                                                           >  6:65787/1‑149                 GTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCC                                                                                                                                                           >  8:196864/1‑149                     GACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCG                                                                                                                                                       <  2:96192/149‑1                                     CCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCG                                                                                                                                       >  4:72203/1‑149                                                  TTCGAGGAACAGCCCGGGATGCAAGCGTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCA                                                                                                                          >  1:160890/1‑149                                                                  GGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCG                                                                                                          <  3:72203/149‑1                                                                      GCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGC                                                                                                       <  2:160890/148‑1                                                                                                                           GCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                         >  2:8313/1‑93                                                                                                                           GCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                         <  1:8313/93‑1                                                                                                                                                        GGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGC                    >  5:61955/1‑149                                                                                                                                                        GGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGC                    >  6:100643/1‑149                                                                                                                                                          AGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGT                  >  7:161671/1‑149                                                                                                                                                          AGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCG                   >  6:311824/1‑148                                                                                                                                                                CGTGCCCGCTAACACCTCCTAAGCGGGTGCAATCAATCAGGTTGCCTGCTTCGGGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATAAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTT            <  2:164653/149‑1                                                                                                                                                                CGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTT            <  1:404/149‑1                                                                                                                                                                CGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTT            <  6:61955/149‑1                                                                                                                                                                CGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTT            <  4:27753/149‑1                                                                                                                                                                CGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTT            <  4:110129/149‑1                                                                                                                                                                 GTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTG           <  8:161671/149‑1                                                                                                                                                                     caGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATC       >  3:286758/3‑149                                                                                                                                                                     CCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATC       >  8:79183/1‑149                                                                                                                                                                           ACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCGGG  <  2:260693/148‑1                                                                                                                                                                                                                                                                                                                                GGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5786325‑5786495 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCGGG  <  NC_002947/5786532‑5786386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.